Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
S. parasitica CBS 223.65 25x 53.09 Mb 48.14 Mb 1,442 280.94 Kb 4,125 34.47 Kb 99.23
S. parasitica CBS 223.65 mito N/A 38.38 Kb 38.38 Kb 1 38.38 Kb 1 38.38 Kb -
S. declina VS20 N/A 62.89 Mb 40.46 Mb 390 602.57 Kb 3,878 30.02 Kb -
H. parasitica -- 82.05 Mb 82.05 Mb 3,138 318.98 Kb 3,138 318.98 Kb -
P. ultimum -- 44.91 Mb 44.91 Mb 975 837.83 Kb 975 837.83 Kb -
P. infestans T30-4 -- 228.54 Mb 190.13 Mb 4,921 1.59 Mb 18,288 44.48 Kb 92.55
P. ramorum Pr102 -- 66.65 Mb 66.65 Mb 2,576 308.04 Kb 2,576 308.04 Kb -
P. sojae P6497 -- 86.03 Mb 86.03 Mb 1,810 462.8 Kb 1,810 462.8 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome