Text Search Help

General Search

Generally, you can just type terms into the text box. The search will return all genes for which that term appears in any context. Examples:

methyltransferase
cyc
histidine kinase

The last example above will give you anything with either "histidine" or "kinase". Use quotes to search for the exact phrase, e.g.:

"histidine kinase"

You can also use "+" to require both terms to be present, but not necessarily in a phrase:

+histidine +kinase

You can use "-" to require that a term not be present. This example returns all genes that match "histidine" but not "kinase":

+histidine -kinase

You can use "*" for prefix searches, e.g.:

sno*

Search by Field

To search against a specific field, prefix the search term with the field name and ":", e.g.:

symbol:cyc-1
est:perithecial
annotation:CA-601

Field searches can be combined like general term searches, e.g.:

+blastx:methyltransferase +est:sexual

Field Reference

The following table lists the fields that can be used for field queries on genes. When no field name is specified in the query, all listed fields are searched.

Field Name Description
descGene name
symbolGene symbol
synonymsSynonyms
locusLocus number, e.g. NCU00022; if the desired gene resulted from a split or merge of a previous gene, you can also specify the previous gene locus
productProtein product (stored as transcript name)
blastxDescription of overlapping blast hits, including gi number and organism name
hmmerDescription of overlapping pfam matches
estDescription of overlapping ests