Genome and Assembly Statistics

Genome Stats

Size Chrs %GC Genes tRNAs rRNAs % Repeat
Ruminococcus sp. 5 1 39B FAA 3.88 Mb N/A 41.31 3,525 54 2 --
Ruminococcaceae bacterium D16 3.24 Mb -- 56.77 3,259 57 6 --

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
Ruminococcus sp. 5 1 39B FAA 21.01X 3.88 Mb 3.8 Mb 47 304.48 Kb 200 39.3 Kb 97.66
Ruminococcaceae bacterium D16 34.42x 3.24 Mb 3.21 Mb 31 784.8 Kb 104 83.68 Kb 99.07

Library Clones

We end-sequenced the following types of libraries:

Plasmid Physical Coverage Fosmid Physical Coverage

Table Header Definitions

  • Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Chrs number of chromosomes
  • %GC GC content of scaffolds
  • Genes number of predicted protein-coding genes in genome
  • tRNAs number of predicted tRNA genes in genome
  • rRNAs number of predicted rRNA genes in genome
  • % Repeat percentage of genome comprised of reptitive sequences
  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to plasmids)
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to fosmids)