Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
L. bacterium 2_1_46FAA (V2) -- 2.22 Mb 2.22 Mb 1 2.22 Mb 9 596.2 Kb -
L. bacterium 5_1_63FAA 22x 3.04 Mb 3.03 Mb 48 116.04 Kb 94 54.63 Kb 99.37
L. bacterium 8_1_57FAA 27x 2.93 Mb 2.91 Mb 51 235.22 Kb 115 61.41 Kb 99.65
L. bacterium 4_1_37FAA 29x 3.07 Mb 3.06 Mb 15 1.87 Mb 38 140 Kb 99.61
L. bacterium 3_1_46FAA 32x 3.12 Mb 3.09 Mb 28 919.15 Kb 80 97.49 Kb 99.73
L. bacterium 6_1_63FAA 40x 2.73 Mb 2.72 Mb 23 331.89 Kb 37 145.06 Kb 99.74
L. bacterium 9_1_43BFAA 20x 2.84 Mb 2.84 Mb 12 672.12 Kb 26 297.83 Kb 99.72
L. bacterium 1_4_56FAA 260x 3.23 Mb 3.23 Mb 32 412.74 Kb 45 263.99 Kb 99.52
L. bact. 3_1_57FAA_CT1 17x 7.73 Mb 7.69 Mb 48 876.46 Kb 145 118.67 Kb 99.50
L. bacterium 5_1_57FAA 20x 3.34 Mb 3.34 Mb 51 165.62 Kb 64 107.97 Kb 99.76
L. bacterium 1_1_57FAA 21x 2.93 Mb 2.91 Mb 39 223.35 Kb 92 67.78 Kb 99.52
L. bacterium 2_1_58FAA 16x 3.46 Mb 3.44 Mb 41 278.83 Kb 90 110.7 Kb 99.46
L. bacterium F0167 34x 3.29 Mb 3.28 Mb 70 157.8 Kb 104 90.47 Kb 99.63
L. bacterium 7_1_58FAA 21x 5.67 Mb 5.62 Mb 102 281.82 Kb 210 68.77 Kb 99.51
L. bacterium ACC2 200x 2.31 Mb 2.31 Mb 5 621.32 Kb 16 366.12 Kb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome