Genome and Assembly Statistics

Genome Stats

Size Chrs %GC Genes tRNAs rRNAs % Repeat
Klebsiella sp. 1_1_55 5.46 Mb -- 57.50 5,014 73 5 --
Klebsiella sp. 4_1_44FAA 5.53 Mb -- 57.11 5,348 80 10 N/A
K. oxytoca 09-7231 6.17 Mb N/A 54.78 5,673 74 22 N/A
K. oxytoca 10-5242 5.79 Mb N/A 55.77 5,353 75 23 N/A
K. oxytoca 10-5243 5.99 Mb N/A 55.05 5,494 82 27 N/A
K. oxytoca 10-5244 6.3 Mb N/A 54.99 5,849 72 26 N/A
K. oxytoca 10-5245 6.18 Mb N/A 54.83 5,735 72 16 N/A
K. oxytoca 10-5246 5.74 Mb N/A 55.49 5,310 73 17 N/A
K. oxytoca 10-5248 6.01 Mb N/A 54.99 5,575 70 25 N/A
K. oxytoca 10-5249 5.99 Mb N/A 54.92 5,498 71 19 N/A
K. oxytoca 10-5250 6.12 Mb -- 55.25 5,612 75 17 --
K. pneumoniae (GB) 5.69 Mb -- 57.15 5,288 86 25 --

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
Klebsiella sp. 1_1_55 20.72X 5.46 Mb 5.42 Mb 19 1.08 Mb 96 110.88 Kb 99.96
Klebsiella sp. 4_1_44FAA 16.0x 5.53 Mb 5.48 Mb 78 501.07 Kb 195 84.37 Kb 99.46
K. oxytoca 09-7231 200x 6.17 Mb 6.15 Mb 5 3.26 Mb 37 324.61 Kb -
K. oxytoca 10-5242 280x 5.79 Mb 5.78 Mb 6 4.72 Mb 40 301.38 Kb -
K. oxytoca 10-5243 176x 5.99 Mb 5.98 Mb 3 4.99 Mb 38 301.58 Kb -
K. oxytoca 10-5244 200x 6.3 Mb 6.25 Mb 10 5.78 Mb 74 231.82 Kb -
K. oxytoca 10-5245 200x 6.18 Mb 6.15 Mb 6 5.92 Mb 52 232.12 Kb -
K. oxytoca 10-5246 164x 5.74 Mb 5.71 Mb 4 5.51 Mb 58 214.55 Kb -
K. oxytoca 10-5248 322x 6.01 Mb 5.99 Mb 6 5.2 Mb 61 175.01 Kb -
K. oxytoca 10-5249 200x 5.99 Mb 5.98 Mb 9 3.11 Mb 39 287.1 Kb -
K. oxytoca 10-5250 200x 6.12 Mb 6.11 Mb 3 5.94 Mb 26 341.07 Kb -
K. pneumoniae (GB) -- 5.69 Mb 5.69 Mb 6 5.32 Mb 6 5.32 Mb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Physical Coverage Fosmid Physical Coverage

Table Header Definitions

  • Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Chrs number of chromosomes
  • %GC GC content of scaffolds
  • Genes number of predicted protein-coding genes in genome
  • tRNAs number of predicted tRNA genes in genome
  • rRNAs number of predicted rRNA genes in genome
  • % Repeat percentage of genome comprised of reptitive sequences
  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to plasmids)
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome
  • Physical Coverage depth of coverage (applies to fosmids)