Assembly Statistics

Assembly Stats

Coverage Assembly Size Total Contig Length Scaffolds Scaffold N50 Contigs Contig N50 %Q40
Klebsiella sp. 1_1_55 20.72X 5.46 Mb 5.42 Mb 19 1.08 Mb 96 110.88 Kb 99.96
Klebsiella sp. 4_1_44FAA 16.0x 5.53 Mb 5.48 Mb 78 501.07 Kb 195 84.37 Kb 99.46
K. oxytoca 09-7231 200x 6.17 Mb 6.15 Mb 5 3.26 Mb 37 324.61 Kb -
K. oxytoca 10-5242 280x 5.79 Mb 5.78 Mb 6 4.72 Mb 40 301.38 Kb -
K. oxytoca 10-5243 176x 5.99 Mb 5.98 Mb 3 4.99 Mb 38 301.58 Kb -
K. oxytoca 10-5244 200x 6.3 Mb 6.25 Mb 10 5.78 Mb 74 231.82 Kb -
K. oxytoca 10-5245 200x 6.18 Mb 6.15 Mb 6 5.92 Mb 52 232.12 Kb -
K. oxytoca 10-5246 164x 5.74 Mb 5.71 Mb 4 5.51 Mb 58 214.55 Kb -
K. oxytoca 10-5248 322x 6.01 Mb 5.99 Mb 6 5.2 Mb 61 175.01 Kb -
K. oxytoca 10-5249 200x 5.99 Mb 5.98 Mb 9 3.11 Mb 39 287.1 Kb -
K. oxytoca 10-5250 200x 6.12 Mb 6.11 Mb 3 5.94 Mb 26 341.07 Kb -
K. pneumoniae (GB) -- 5.69 Mb 5.69 Mb 6 5.32 Mb 6 5.32 Mb -

Library Clones

We end-sequenced the following types of libraries:

Plasmid Fosmid

Table Header Definitions

  • Coverage -fold coverage of the genome sequenced
  • Assembly Size length of complete genome sequence, calculated by adding lengths of all scaffolds together
  • Total Contig Length total length of all the contigs added together
  • Scaffolds number of scaffolds/supercontigs contained in a genome assembly
  • Scaffold N50 length of the scaffold containing the middle base of the genome
  • Contigs number of contigs contained in a genome assembly
  • Contig N50 length of the contig containing the middle base of the genome
  • %Q40 percentage of contig bases with quality scores equal to or greater than 40
  • Plasmid number of plasmids sequenced and subsequently assembled in the genome
  • Fosmid number of fosmids sequenced and subsequently assembled in the genome