Neurospora crassa Genes
- Description
Information on how this putative gene set was created
- Search for genes
Search database of all Neurospora crassa genes by
name, locus, position, or PFAM domain
- BLAST against protein set
Use BlastX or BlastP or search against the set of predicted proteins of all Neurospora crassa genes by
name, locus, position, or PFAM domain
- Download complete list of gene correspondence
Download a comma-separated file listing correspondence of genes between release 3 and release 7.
- Download list of genes whose ORFs have moved substantially in this release
This file contains a list of 475 genes with a one to one mapping in
the previous release where the release 7 start codon is more than 150 bases upstream
of the release 3 start codon, or the release 7 stop codon is more than
150 bases downstream of the release 3 stop codon. It does not include
added, merged, split, or deleted genes.
- Download list of genes which have been widened by 150bp or more
This is a list of 201 locus numbers where a release 7 gene
corresponds 1 to 1 with a release 3 gene, the ORF of the release 7 gene has
widened by 150bp or more at either the 5' or 3' end, and the release 7
gene call is based on homology to a protein in NR.
- Download list of Fgenesh-based genes which have been widened by 150bp or more
This list of 100 locus numbers is the subset of the 201 genes based on
protein homology in release 7 whose corresponding release 3 gene was
based on an ab-initio gene call (Fgenesh)
- Download FASTA files and supplementary material
FASTA files for genome sequence, genes, translated proteins are available.
- Genes by PFAM domain
Genes categorized by HMMER hit to a PFAM protein
domain
- Genes by EST library
Maps EST libraries to gene loci
- Genome Statistics
View basic statistics about genome size, gene density, coding regions, exon/intron sizes,
codon usage, etc.