Neurospora crassa EST Clones to Loci Mapping

Description

There are 10 libraries of expressed sequence tags (ESTs) available for Neurospora. We have associated the clones from these EST libraries to their corresponding gene locus in Neurospora release 7.

A single corresponding gene was found for 81% of all the EST clones, 6% mapped to multiple genes, and the remaining 13% were left unmapped. A clone is considered as mapped if either the forward or reverse read overlaps the gene, by as little as one base.

The file nc7.stats.csv gives the percentages of each EST library that were mapped to one gene, mapped to multiple genes, and unmapped.

Download

The following files are available for download:

EST to Loci	Loci to EST
nc7.est2loci.NC_EST_CONIDIAL.map nc7.est2loci.NC_EST_EVENING.map nc7.est2loci.NC_EST_MORNING.map nc7.est2loci.NC_EST_MYCELIAL.map nc7.est2loci.NC_EST_PERITHECIAL.map nc7.est2loci.NC_EST_SCONIDIAL.map nc7.est2loci.NC_EST_SEXUAL.map nc7.est2loci.NC_EST_SMYCELIAL.map nc7.est2loci.NC_EST_SPERITHECIAL.map nc7.est2loci.NC_EST_WESTERGAARDS.map	nc7.loci2est.NC_EST_CONIDIAL.map nc7.loci2est.NC_EST_EVENING.map nc7.loci2est.NC_EST_MORNING.map nc7.loci2est.NC_EST_MYCELIAL.map nc7.loci2est.NC_EST_PERITHECIAL.map nc7.loci2est.NC_EST_SCONIDIAL.map nc7.loci2est.NC_EST_SEXUAL.map nc7.loci2est.NC_EST_SMYCELIAL.map nc7.loci2est.NC_EST_SPERITHECIAL.map nc7.loci2est.NC_EST_WESTERGAARDS.map

These tab-delimited files represents a single EST library and come in two versions. The first maps EST to loci, with the columns CLONE and LOCUS, in that order. When a clone could not be mapped, NOT_MAPPED is specified as gene locus. The second maps loci to a comma-separated list of ESTs, with the columns LOCUS and CLONES, in that order.

For your convenience, combined files containing all EST clones have also been provided:

EST to Loci	Loci to EST
nc7.est2loci.map	nc7.loci2est.map

The first (EST to loci) has the columns LIBRARY, CLONE and LOCUS, in that order. The second (loci to EST) has the columns LOCUS and CLONES, in that order.