Comparative Protein Analysis
Description
The entire set of predicted
Neurospora crassa 3 proteins was compared to all
known protein sequences by conducting a BlastP similarity search
(Expect < 1e-5) against NCBI's non-redundant protein set NR (February 2002).
The resulting BlastP alignments for each protein were grouped according to
their NCBI taxonomic kingdom or superkingdom.
The table below contains
a column listing the total number of
Neurospora crassa 3 genes that have similarity
to known proteins in the given Kingdom category or categories.
The second column presents the number of
Neurospora crassa 3 genes with similarity to known proteins, where the BlastP alignment exceeds 60% of the gene length
Clicking on the data in the table will display the corresponding list of
Neurospora crassa 3 genes.
Categorization by Kingdom
| Kingdom / Superkingdom |
All Blastp Matches |
Blastp Matches with 60% or more overlap |
|---|
| Fungi |
1467 |
1467 |
| Fungi & Metazoa & Viridiplantae |
1249 |
823 |
| Fungi & Metazoa & Viridiplantae & Bacteria & Archaea |
907 |
466 |
| Fungi & Metazoa & Viridiplantae & Bacteria |
553 |
311 |
| Fungi & Metazoa |
416 |
326 |
| Fungi & Metazoa & Viridiplantae & Archaea |
164 |
117 |
| Fungi & Bacteria |
160 |
140 |
| Metazoa |
133 |
116 |
| Fungi & Viridiplantae |
115 |
122 |
| Fungi & Viridiplantae & Bacteria |
112 |
91 |
| Fungi & Metazoa & Bacteria |
101 |
73 |
| Bacteria |
97 |
82 |
| Fungi & Viridiplantae & Bacteria & Archaea |
71 |
37 |
| Fungi & Metazoa & Bacteria & Archaea |
61 |
31 |
| Viridiplantae |
58 |
43 |
| Metazoa & Viridiplantae |
57 |
49 |
| Fungi & Bacteria & Archaea |
43 |
35 |
| Metazoa & Viridiplantae & Bacteria |
25 |
16 |
| Metazoa & Bacteria |
24 |
23 |
| Viridiplantae & Bacteria |
22 |
19 |
| Metazoa & Bacteria & Archaea |
19 |
11 |
| Metazoa & Viridiplantae & Bacteria & Archaea |
16 |
16 |
| Fungi & Archaea |
9 |
5 |
| Fungi & Metazoa & Archaea |
9 |
9 |
| Bacteria & Archaea |
8 |
5 |
| Archaea |
5 |
3 |
| Viridiplantae & Bacteria & Archaea |
5 |
2 |
| Fungi & Viridiplantae & Archaea |
4 |
4 |
| Metazoa & Viridiplantae & Archaea |
4 |
0 |
| Metazoa & Archaea |
3 |
4 |
| Viridiplantae & Archaea |
1 |
1 |
|
Categorization by Kingdom Pairs
The table below breaks down the data by kingdom pairs. Each table cell is a count of
Neurospora crassa 3 genes that has a BlastP match to the kingdoms listed in the given row and column. The count represents
those genes that have at least one match to both sets of kingdoms. The
gene may have BlastP hits matching multiple kingdoms but it is added to
the score as long as there is at least one BlastP alignment to each of
the sets of kingdoms. For example, the cell (Metazoa, Viridiplantae)
represents the total number of
Neurospora crassa 3 genes that contain at
least one BlastP alignment
to the Metazoa kingdom and one BlastP alignment to the Plant kingdom.
|
Archaea |
Bacteria |
Fungi |
Metazoa |
Viridiplantae |
|---|
| Archaea | 1329 |
1130 |
1268 |
1183 |
1172 |
|---|
| Bacteria | 1130 |
2224 |
2008 |
1706 |
1711 |
|---|
| Fungi | 1268 |
2008 |
5441 |
3460 |
3175 |
|---|
| Metazoa | 1183 |
1706 |
3460 |
3741 |
2975 |
|---|
| Viridiplantae | 1172 |
1711 |
3175 |
2975 |
3363 |
|---|
|
Categorization by Kingdom Pairs (BlastP overlap > 60%)
The table below breaks down the data by kingdom pairs. Each table cell is a count of
Neurospora crassa 3 genes that has a BlastP match with a minimum percentage overlap of 60% to the kingdoms listed in the given row and column. The count represents
those genes that have at least one match to both sets of kingdoms. The
gene may have BlastP hits matching multiple kingdoms but it is added to
the score as long as there is at least one BlastP alignment to each of
the sets of kingdoms. For example, the cell (Metazoa, Viridiplantae)
represents the total number of
Neurospora crassa 3 genes that contain at
least one BlastP alignment
with a minimum percent overlap of 60% to the Metazoa kingdom and one BlastP alignment to the Plant kingdom.
|
Archaea |
Bacteria |
Fungi |
Metazoa |
Viridiplantae |
|---|
| Archaea | 746 |
603 |
704 |
654 |
643 |
|---|
| Bacteria | 603 |
1358 |
1184 |
947 |
958 |
|---|
| Fungi | 704 |
1184 |
4057 |
2156 |
1971 |
|---|
| Metazoa | 654 |
947 |
2156 |
2391 |
1798 |
|---|
| Viridiplantae | 643 |
958 |
1971 |
1798 |
2117 |
|---|
|
Venn Diagram
