Neurospora crassa Summary Genome Statistics
Automated Gene Finding
Automated annotation sets the stage for the manual annotation of the Neurospora crassa genome.
An automatic annotation and analysis of the assembled sequence was performed using the Calhoun system. A combination of the Fgenesh, Fgenesh+, Genewise, BLAST searches of the public protein and nucleotide databases, and HMMer searches of the PFAM database, was used to predict protein-coding genes. A total of 10,082 genes were identified, over 4000 of which show no sequence similarity to other known proteins.
See also a detailed description of the automated gene structure prediction and naming methods.
Genome Coverage
Comment: Compare to MIPS total gene density: one gene per 3.1 kb
| Coding DNA as % of Total: | 38.3 |
|---|---|
| Genic DNA as % of Total: | 44.4 |
| Gene Density: | 1 Gene per 3773.5 bp |
Feature Statistics [ Download tab delimited ]
Comment: Compare to MIPS total GC%: 52
| CONTIG | EXON | GENE | CODING_SEQ | INTERGENIC | INTRON | NONCODING | |
|---|---|---|---|---|---|---|---|
| count | 821 | 27200 | 10082 | 10082 | 10857 | 17118 | 27975 |
| total | 38044345 | 14556162 | 16874446 | 14556162 | 21205333 | 2318284 | 23523617 |
| coverage | 100.0 | 38.3 | 44.4 | 38.3 | 55.7 | 6.1 | 61.8 |
| gcp | 49.9% | 56.0% | 54.9% | 56.0% | 45.9% | 47.7% | 46.1% |
| min | 2000 | 1 | 86 | 30 | 3 | 20 | 3 |
| max | 522296 | 15030 | 33235 | 32463 | 48111 | 2074 | 48111 |
| median | 27436.0 | 245.0 | 1395.0 | 1191.0 | 1336.0 | 84.0 | 182.0 |
| average | 46339.0 | 535.2 | 1673.7 | 1443.8 | 1953.1 | 135.4 | 840.9 |
Features by Length [ Download tab delimited ]
Genes By Intron Count [ Download tab delimited ]
