Physical and Genetic Map for Linkage group V

Combined Physical and Genetic Map
 

Physical and Genetic Map

Linkage group V

Genetic markers in this linkage group are either well-ordered (in a specific order on the genetic map) or not well-ordered. The following three panels relate the genetic markers to our supercontigs:
  • Ordered Physical Map Panel (left) displays supercontigs that contain well-ordered markers. The well-ordered markers determine the relative order of the supercontigs.
  • Unordered Supercontig Panel (below) displays supercontigs that contain only not-well-ordered markers; thus these supercontigs are known to be in Linkage group V, though their order relative to other supercontigs has not been determined
  • Unplaced Marker Panel (bottom) lists the remaining markers: those not-well-ordered markers in Linkage group V which have not been located in our assembly
See Genetic Map Description and David Perkins' Genetic Map for details.
Legend
supercontig number Supercontig number (linked to data table listing size and contigs)
supercontig ruler Supercontig Ruler (linked to data table listing size and contigs)
contig ruler Contig Ruler (linked to graphical viewer)
| Genetic Map Ruler
name Marker with sequence located in a contig (linked to Marker Detail page)
*name Marker with sequence located in a contig and a position on the genetic map (linked to Marker Detail page)
name Marker with no associated sequence or not found in assembly
contig marker Marker location on contig, strand indicated (linked to graphical viewer)
] Subgroup of markers with uncertain relative order. The subgroup itself is ordered on the larger map
Click on contig ruler to view region in

Unordered Supercontig Panel

The following supercontigs contain markers known to be in this linkage group, but with unknown relative position on the genetic map.
Unordered Markers

Unplaced Marker Panel

The following markers are known to be in Linkage group V, however they are not well-ordered on the genetic map and are not found on supercontigs. Most of these markers have no associated sequence, and thus cannot be located in our assembly. Many of these markers do have some relative position information, which is available on David Perkins' Genetic Map.

acu-1, amt, Asc(KH2A83), chol-3, cit-2, cl, col-9, con-2, con-4a, con-4b, cot-4, cox-6, cya-2, cya-7, cyb-1, dim-3, en(am)-1, erg-2, esr-1, fkr-1, fpr-1, fpr-4, Fsr-16, Fsr-20, Fsr-9, gln-1, gran, hah, het-12, hgu-4, Iasc, lis-3, md, mei-2, mfa-1, mus(SC17), mus-12, mus-28, mus-34, mus-37, ndc-1, nuh-3, pcna, pl, pold, prd-2, prd-6, Prf, pro-3, psp, rec-1, rec-2, rol-3, scot, sdv-6, sen, sh, smco-6, sor-5, spco-10, spco-9, ssu-6, su([mi-1])-f, su(Asm-1)-?, su(asm-1)-??, su(het-d), su(ile-1), Tip-VL, Tip-VR, ts, uc-4, udk, un-11, un-19, ure(D2), usg-1, val