Genes Categorized by Hmmer Family
Find all genes containing the specified PFAM domain.
| Family | Family Description | Annotated Genes |
|---|---|---|
| 14-3-3 | 14-3-3 proteins | 1 |
| 2-Hacid_DH | D-isomer specific 2-hydroxyacid dehydrogenases | 5 |
| 2-Hacid_DH_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 10 |
| 2-oxoacid_dh | 2-oxo acid dehydrogenases acyltransferase (catalytic domain) | 3 |
| 2OG-FeII_Oxy | 2OG-Fe(II) oxygenase superfamily | 14 |
| 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 3 |
| 3HCDH | 3-hydroxyacyl-CoA dehydrogenase | 2 |
| 3HCDH_N | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | 2 |
| 3_5_exonuclease | 3'-5' exonuclease | 1 |
| 5-FTHF_cyc-lig | 5-formyltetrahydrofolate cyclo-ligase | 1 |
| 5_nucleotidaseC | 5'-nucleotidase, C-terminal domain | 2 |
| 60s_ribosomal | 60s Acidic ribosomal protein | 3 |
| 6PF2K | 6-phosphofructo-2-kinase | 3 |
| 6PGD | 6-phosphogluconate dehydrogenases | 1 |
| A1pp | Appr-1"-p processing enzyme family | 1 |
| AAA | ATPases associated with various cellular activities (AAA) | 37 |
| ABC1 | ABC1 family | 3 |
| ABC_membrane | ABC transporter transmembrane region. | 13 |
| ABC_tran | ABC transporter | 35 |
| ACBP | Acyl CoA binding protein | 1 |
| ACPS | Holo-acyl carrier protein synthase | 1 |
| ACT | ACT domain | 2 |
| AFG1_ATPase | AFG1-like ATPase | 2 |
| AICARFT_IMPCHas | AICARFT/IMPCHase bienzyme | 1 |
| AIRC | AIR carboxylase | 1 |
| ALAD | Delta-aminolevulinic acid dehydratase | 1 |
| ALA_synthase | Aminolevulinic acid synthase domain | 1 |
| ALO | D-arabinono-1,4-lactone oxidase | 1 |
| AMP-binding | AMP-binding enzyme | 34 |
| APC10 | Anaphase-promoting complex, subunit 10 (APC10) | 1 |
| APC8 | Anaphase promoting complex subunit 8 / cdc23 | 1 |
| APG12 | Autophagy protein Apg12 | 1 |
| APG5 | Autophagy protein Apg5 | 1 |
| APG6 | Autophagy protein Apg6 | 1 |
| APG9 | Autophagy protein Apg9 | 1 |
| APH | Aminoglycoside phosphotransferase | 1 |
| APS_kinase | Adenylylsulfate kinase | 2 |
| AP_endonuc_2 | AP endonuclease family 2 | 1 |
| ARD | ARD/ARD'' family | 1 |
| ARID | ARID DNA binding domain | 3 |
| ATP-bind | Conserved hypothetical ATP binding protein | 3 |
| ATP-cone | ATP cone domain | 1 |
| ATP-grasp | ATP-grasp domain | 2 |
| ATP-sulfurylase | ATP-sulfurylase | 1 |
| ATP-synt | ATP synthase | 1 |
| ATP-synt_C | ATP synthase subunit C | 6 |
| ATP-synt_D | ATP synthase subunit D | 1 |
| ATP-synt_DE_N | ATP synthase, Delta/Epsilon chain, beta-sandwich domain | 1 |
| ATP-synt_F | ATP synthase (F/14-kDa) subunit | 1 |
| ATP-synt_ab | ATP synthase alpha/beta family | 4 |
| ATP-synt_ab_C | ATP synthase ab C terminal | 4 |
| ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain | 3 |
| ATZ_TRZ | Chlorohydrolase | 1 |
| A_deaminase | Adenosine/AMP deaminase | 3 |
| Aa_trans | Transmembrane amino acid transporter protein | 8 |
| Abi | CAAX amino terminal protease family | 1 |
| AcetylCoA_hydro | Acetyl-CoA hydrolase/transferase | 1 |
| Acetyltransf | Acetyltransferase (GNAT) family | 18 |
| Aconitase_C | Aconitase C-terminal domain | 5 |
| Acyl-CoA_dh | Acyl-CoA dehydrogenase | 7 |
| Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 7 |
| Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain | 3 |
| Acyl_CoA_thio | Acyl-CoA thioesterase | 1 |
| Acyl_transf | Acyl transferase domain | 20 |
| Acyltransferase | Acyltransferase | 3 |
| Adap_comp_sub | Adaptor complexes medium subunit family | 2 |
| Adaptin_N | Adaptin N terminal region | 8 |
| Adenylsucc_synt | Adenylosuccinate synthetase | 1 |
| AdoHcyase | S-adenosyl-L-homocysteine hydrolase | 1 |
| AhpC-TSA | AhpC/TSA family | 4 |
| AlaDh_PNT | Alanine dehydrogenase/pyridine nucleotide transhydrogenase | 2 |
| Aldolase_II | Class II Aldolase and Adducin N-terminal domain. | 4 |
| Aldose_epim | Aldose 1-epimerase | 4 |
| Alg6_Alg8 | ALG6, ALG8 glycosyltransferase family | 2 |
| Allantoicase | Allantoicase repeat | 1 |
| Alpha_L_fucos | Alpha-L-fucosidase | 2 |
| Alpha_adaptinC2 | Alpha adaptin AP2, N-terminal domain | 1 |
| Alpha_adaptin_C | Alpha adaptin carboxyl-terminal domain | 1 |
| Amidase | Amidase | 10 |
| Amino_oxidase | Flavin containing amine oxidase | 7 |
| Ammonium_transp | Ammonium Transporter Family | 3 |
| Anp1 | Anp1 | 2 |
| ApbA | Ketopantoate reductase PanE/ApbA | 3 |
| ArfGap | Putative GTP-ase activating protein for Arf | 4 |
| ArgJ | ArgJ family | 1 |
| Arginosuc_synth | Arginosuccinate synthase | 1 |
| Armadillo_seg | Armadillo/beta-catenin-like repeats | 3 |
| ArsA_ATPase | Anion-transporting ATPase | 1 |
| Arv1 | Arv1-like family | 1 |
| Asn_synthase | Asparagine synthase | 2 |
| Asparaginase | Asparaginase | 1 |
| Asparaginase_2 | Asparaginase | 2 |
| Autophagy_C | Autophagocytosis associated protein, C-terminal domain | 1 |
| Autophagy_N | Autophagocytosis associated protein, N-terminal domain | 1 |
| BAG | Domain present in Hsp70 regulators | 1 |
| BAH | BAH domain | 2 |
| BAR | BAR domain | 1 |
| BIR | Inhibitor of Apoptosis domain | 1 |
| BNR | BNR repeat | 3 |
| BPL_LipA_LipB | Biotin/lipoate A/B protein ligase family | 3 |
| BRCT | BRCA1 C Terminus (BRCT) domain | 10 |
| BRO1 | BRO1-like domain | 1 |
| BSD | BSD domain | 1 |
| BTB | BTB/POZ domain | 1 |
| Bac_rhodopsin | Bacteriorhodopsin | 1 |
| Band_7 | Band 7 family | 4 |
| Beach | Beige/BEACH domain | 1 |
| Bgal_small_C | Beta galactosidase small chain, C terminal domain | 3 |
| Bgal_small_N | Beta galactosidase small chain, N terminal domain | 3 |
| Biotin_carb_C | Biotin carboxylase C-terminal domain | 4 |
| BolA | BolA-like protein | 3 |
| C2 | C2 domain | 7 |
| C4dic_mal_tran | C4-dicarboxylate transporter/malic acid transport protein | 3 |
| CAIB-BAIF | CAIB/BAIF family | 7 |
| CAP | CAP protein | 1 |
| CAP_GLY | CAP-Gly domain | 4 |
| CAS_CSE1 | CAS/CSE protein, C-terminus | 1 |
| CBF | CBF/Mak21 family | 1 |
| CBFB_NFYA | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 1 |
| CBFD_NFYB_HMF | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 2 |
| CBM_1 | Fungal cellulose binding domain | 16 |
| CBM_20 | Starch binding domain | 3 |
| CBM_21 | Putative phosphatase regulatory subunit | 1 |
| CBM_6 | Carbohydrate binding module (family 6) | 2 |
| CBS | CBS domain | 6 |
| CDC45 | CDC45-like protein | 1 |
| CDP-OH_P_transf | CDP-alcohol phosphatidyltransferase | 3 |
| CH | Calponin homology (CH) domain | 3 |
| CKS | Cyclin-dependent kinase regulatory subunit | 1 |
| CK_II_beta | Casein kinase II regulatory subunit | 2 |
| CLN3 | CLN3 protein | 1 |
| CLP_protease | Clp protease | 1 |
| CMAS | Cyclopropane-fatty-acyl-phospholipid synthase | 1 |
| CNH | CNH domain | 1 |
| CN_hydrolase | Carbon-nitrogen hydrolase | 4 |
| COQ7 | Ubiquinone biosynthesis protein COQ7 | 1 |
| COX15-CtaA | Cytochrome oxidase assembly protein | 1 |
| COX4 | Cytochrome c oxidase subunit IV | 1 |
| COX5A | Cytochrome c oxidase subunit Va | 1 |
| COX5B | Cytochrome c oxidase subunit Vb | 1 |
| COX6A | Cytochrome c oxidase subunit VIa | 1 |
| COX6B | Cytochrome oxidase c subunit VIb | 1 |
| COesterase | Carboxylesterases | 18 |
| CPSF_A | CPSF A subunit region | 2 |
| CPSase_L_D2 | Carbamoyl-phosphate synthase L chain, ATP binding domain | 6 |
| CPSase_L_D3 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain | 2 |
| CPSase_L_chain | Carbamoyl-phosphate synthase (CPSase) | 6 |
| CPSase_sm_chain | Carbamoyl-phosphate synthase small chain, CPSase domain | 2 |
| CRAL_TRIO | CRAL/TRIO domain. | 4 |
| CRAL_TRIO_N | CRAL/TRIO, N-terminus | 4 |
| CRCB | CrcB-like protein | 1 |
| CTP_transf_1 | Phosphatidate cytidylyltransferase | 1 |
| CTP_transf_2 | Cytidylyltransferase | 2 |
| CUE | CUE domain | 2 |
| Cad | Cadmium resistance transporter | 1 |
| Carboxyl_trans | Carboxyl transferase domain | 2 |
| Carn_acyltransf | Carnitate acyltransferase | 2 |
| Cation_ATPase_C | Cation transporting ATPase, C-terminus | 10 |
| Cation_ATPase_N | Cation transporter/ATPase, N-terminus | 6 |
| Cation_efflux | Cation efflux family | 7 |
| Cdc37 | Cdc37 family | 1 |
| Cgr1 | Cgr1 family | 1 |
| Chal_stil_synt | Chalcone and stilbene synthases | 2 |
| Chal_stil_syntC | Chalcone and stilbene synthases, C-terminal domain | 1 |
| Chitin_bind_1 | Chitin recognition protein | 12 |
| Chitin_synth | Chitin synthase | 3 |
| Chitin_synth_2 | Chitin synthase | 1 |
| Choline_kinase | Choline/ethanolamine kinase | 2 |
| Chorismate_mut | Chorismate mutase | 1 |
| Chorismate_synt | Chorismate synthase | 1 |
| Cl_perox | Vanadium chloroperoxidase | 1 |
| Clat_adaptor_s | Clathrin adaptor complex small chain | 4 |
| Clathrin | Region in Clathrin and VPS | 1 |
| Clathrin_propel | Clathrin propeller repeat | 1 |
| Cnd3_C | Chromosome condensation protein 3, C-terminal region | 1 |
| CoA_binding | CoA binding domain | 3 |
| CoaE | Dephospho-CoA kinase | 1 |
| Coatomer_WDAD | Coatomer WD associated domain | 2 |
| Complex1_51K | Respiratory-chain NADH dehydrogenase 51 Kd subunit | 1 |
| Condensation | Condensation domain | 10 |
| Copper-fist | Copper fist DNA binding domain. | 2 |
| Coprogen_oxidas | Coproporphyrinogen III oxidase | 1 |
| CorA | CorA-like Mg2+ transporter protein | 2 |
| Cornichon | Cornichon protein | 1 |
| Ctr | Ctr copper transporter family | 5 |
| Cu-oxidase | Multicopper oxidase | 11 |
| Cu_amine_oxid | Copper amine oxidase | 5 |
| Cu_amine_oxidN2 | Copper amine oxidase, N2 domain | 3 |
| Cu_amine_oxidN3 | Copper amine oxidase, N3 domain | 2 |
| Cullin | Cullin family | 3 |
| Cupin | Cupin | 1 |
| CutC | CutC family | 1 |
| Cutinase | Cutinase | 9 |
| Cyanate_lyase | Cyanate lyase C-terminal domain | 1 |
| Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 4 |
| Cyto_heme_lyase | Cytochrome c/c1 heme lyase | 2 |
| Cytochrome_C1 | Cytochrome C1 family | 1 |
| DAD | DAD family | 1 |
| DAGAT | Diacylglycerol acyltransferase | 1 |
| DAGKc | Diacylglycerol kinase catalytic domain (presumed) | 1 |
| DAG_PE-bind | Phorbol esters/diacylglycerol binding domain (C1 domain) | 2 |
| DAHP_synth_1 | DAHP synthetase family | 2 |
| DAHP_synth_2 | Class-II DAHP synthetase family | 1 |
| DAO | D-amino acid oxidase | 3 |
| DDE | DDE superfamily endonuclease | 124 |
| DDHD | DDHD domain | 1 |
| DDOST_48kD | Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit | 1 |
| DEAD | DEAD/DEAH box helicase | 36 |
| DENN | DENN (AEX-3) domain | 1 |
| DEP | Domain found in Dishevelled, Egl-10, and Pleckstrin | 2 |
| DHBP_synthase | 3,4-dihydroxy-2-butanone 4-phosphate synthase | 1 |
| DHDPS | Dihydrodipicolinate synthetase family | 6 |
| DHHA2 | DHHA2 domain | 1 |
| DHOdehase | Dihydroorotate dehydrogenase | 1 |
| DHQ_synthase | 3-dehydroquinate synthase | 2 |
| DHquinase_I | Type I 3-dehydroquinase | 1 |
| DHquinase_II | Dehydroquinase class II | 1 |
| DIL | DIL domain | 2 |
| DIM1 | Mitosis protein DIM1 | 1 |
| DJ-1_PfpI | DJ-1/PfpI family | 2 |
| DLH | Dienelactone hydrolase family | 3 |
| DMRL_synthase | 6,7-dimethyl-8-ribityllumazine synthase | 1 |
| DNA_gyraseB | DNA gyrase B | 1 |
| DNA_ligase | DNA ligase | 3 |
| DNA_methylase | C-5 cytosine-specific DNA methylase | 2 |
| DNA_mis_repair | DNA mismatch repair protein | 1 |
| DNA_photolyase | DNA photolyase | 2 |
| DNA_pol_A | DNA polymerase family A | 1 |
| DNA_pol_B | DNA polymerase family B | 3 |
| DNA_pol_B_exo | DNA polymerase family B, exonuclease domain | 2 |
| DNA_pol_E_B | DNA polymerase epsilon subunit B | 1 |
| DNA_pol_alpha_B | DNA polymerase alpha subunit B | 1 |
| DNA_pol_delta_4 | DNA polymerase delta, subunit 4 | 1 |
| DNA_primase_S | DNA primase small subunit | 1 |
| DNA_primase_lrg | Eukaryotic-type DNA primase, large subunit | 1 |
| DNA_topoisoIV | DNA gyrase/topoisomerase IV, subunit A | 1 |
| DPPIV_N_term | Dipeptidyl peptidase IV (DPP IV) N-terminal region | 2 |
| DS | Deoxyhypusine synthase | 1 |
| DSPc | Dual specificity phosphatase, catalytic domain | 3 |
| DUF122 | Protein of unknown function | 1 |
| DUF124 | Protein of unknown function | 1 |
| DUF14 | Domain of unknown function | 1 |
| DUF154 | Uncharacterized ACR, COG1490 | 1 |
| DUF155 | Uncharacterized ACR, YagE family COG1723 | 3 |
| DUF159 | Uncharacterized ACR, COG2135 | 1 |
| DUF167 | Uncharacterized ACR, YggU family COG1872 | 1 |
| DUF171 | Uncharacterized ACR, COG2106 | 1 |
| DUF183 | Uncharacterized ACR, COG1984 | 1 |
| DUF185 | Uncharacterized ACR, COG1565 | 1 |
| DUF207 | Uncharacterized ACR, COG1590 | 1 |
| DUF209 | Uncharacterized BCR, YhhW family COG1741 | 1 |
| DUF221 | Domain of unknown function DUF221 | 4 |
| DUF232 | Putative transcriptional regulator | 2 |
| DUF252 | Putative tyrosine phosphatase family | 1 |
| DUF254 | SAND family protein | 1 |
| DUF259 | Protein of unknown function, DUF259 | 1 |
| DUF279 | Eukaryotic protein of unknown function, DUF279 | 2 |
| DUF28 | Domain of unknown function | 1 |
| DUF283 | Domain of unknown function | 1 |
| DUF292 | Eukaryotic protein of unknown function, DUF292 | 1 |
| DUF298 | Domain of unknown function (DUF298) | 1 |
| DUF300 | Domain of unknown function | 2 |
| DUF307 | Domain of unknown function (DUF307) | 1 |
| DUF338 | Domain of unknown function (DUF338) | 1 |
| DUF339 | Domain of unknown function (DUF339) | 1 |
| DUF34 | Domain of unknown function | 1 |
| DUF341 | Domain of unknown function (DUF341) | 1 |
| DUF367 | Domain of unknown function (DUF367) | 1 |
| DUF380 | Domain of unknown function (DUF380) | 1 |
| DUF382 | Domain of unknown function (DUF382) | 1 |
| DUF383 | Domain of unknown function (DUF383) | 1 |
| DUF384 | Domain of unknown function (DUF384) | 1 |
| DUF392 | Domain of unknown function (DUF392) | 1 |
| DUF396 | Protein of unknown function (DUF396) | 1 |
| DUF409 | Protein of unknown function (DUF409) | 1 |
| DUF410 | Protein of unknown function (DUF410) | 1 |
| DUF423 | Protein of unknown function (DUF423) | 1 |
| DUF425 | Protein of unknown function (DUF425) | 1 |
| DUF427 | Domain of unknown function (DUF427) | 2 |
| DUF431 | Protein of unknown function (DUF431) | 1 |
| DUF435 | Membrane protein of unknown function (DUF435) | 1 |
| DUF449 | Protein of unknown function (DUF449) | 1 |
| DUF453 | Protein of unknown function (DUF453) | 2 |
| DUF51 | Protein of unknown function | 1 |
| DUF56 | Integral membrane protein | 1 |
| DUF59 | Domain of unknown function | 1 |
| DUF6 | Integral membrane protein | 2 |
| DUF71 | Domain of unknown function | 1 |
| DUF74 | Domain of unknown function | 2 |
| DUF77 | Protein of unknown function | 1 |
| Dak1 | Dak1 domain | 2 |
| Dak2 | DAK2 domain | 2 |
| DiHfolate_red | Dihydrofolate reductase | 1 |
| Dihydroorotase | Dihydroorotase-like | 2 |
| Dioxygenase | Dioxygenase | 3 |
| Diphthamide_syn | Putative diphthamide synthesis protein | 2 |
| DnaJ | DnaJ domain | 22 |
| DnaJ_C | DnaJ C terminal region | 4 |
| DnaJ_CXXCXGXG | DnaJ central domain (4 repeats) | 3 |
| Dor1 | Dor1-like family | 1 |
| Dus | Dihydrouridine synthase (Dus) | 3 |
| Dynein_light | Dynein light chain type 1 | 1 |
| E1-E2_ATPase | E1-E2 ATPase | 12 |
| E1_DerP2_DerF2 | E1 family | 1 |
| E1_dehydrog | Dehydrogenase E1 component | 2 |
| EAP30 | EAP30 | 1 |
| EB1 | EB1-like C-terminal motif | 1 |
| ECH | Enoyl-CoA hydratase/isomerase family | 6 |
| EF1BD | EF-1 guanine nucleotide exchange domain | 1 |
| EF1G_domain | Elongation factor 1 gamma, conserved domain. | 1 |
| EFG_C | Elongation factor G C-terminus | 5 |
| EFG_IV | Elongation factor G, domain IV | 3 |
| EMP24_GP25L | emp24/gp25L/p24 family | 4 |
| EMP70 | Endomembrane protein 70 | 1 |
| ENTH | ENTH domain | 3 |
| EPSP_syntase | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | 1 |
| ERCC4 | ERCC4 domain | 2 |
| ERG4_ERG24 | Ergosterol biosynthesis ERG4/ERG24 family | 3 |
| ERO1 | Endoplasmic Reticulum Oxidoreductin 1 (ERO1) | 1 |
| ER_lumen_recept | ER lumen protein retaining receptor | 2 |
| ETF_beta | Electron transfer flavoprotein beta subunit | 1 |
| EXS | EXS family | 1 |
| Endonuclease | DNA/RNA non-specific endonuclease | 1 |
| Epimerase | NAD dependent epimerase/dehydratase family | 2 |
| Esterase | Putative esterase | 1 |
| Euk_porin | Eukaryotic porin | 1 |
| Exci_endo_N | Endo/excinuclease amino terminal domain | 1 |
| Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | 29 |
| Exonuclease | Exonuclease | 5 |
| Exportin-t | Exportin-t | 1 |
| F-box | F-box domain. | 11 |
| FAA_hydrolase | Fumarylacetoacetate (FAA) hydrolase family | 6 |
| FAD-oxidase_C | FAD linked oxidases, C-terminal domain | 2 |
| FAD_Synth | Riboflavin kinase / FAD synthetase | 1 |
| FAD_binding_1 | FAD binding domain | 8 |
| FAD_binding_2 | FAD binding domain | 2 |
| FAD_binding_3 | FAD binding domain | 7 |
| FAD_binding_4 | FAD binding domain | 33 |
| FAD_binding_6 | Oxidoreductase FAD-binding domain | 5 |
| FAD_binding_7 | FAD binding domain of DNA photolyase | 3 |
| FAT | FAT domain | 2 |
| FATC | FATC domain | 3 |
| FA_desaturase | Fatty acid desaturase | 5 |
| FBPase | Fructose-1-6-bisphosphatase | 2 |
| FCH | Fes/CIP4 homology domain | 3 |
| FDX-ACB | Ferredoxin-fold anticodon binding domain | 1 |
| FF | FF domain | 1 |
| FGGY | FGGY family of carbohydrate kinases | 2 |
| FGGY_C | FGGY family of carbohydrate kinases, C-terminal domain | 1 |
| FH2 | Formin Homology 2 Domain | 1 |
| FHA | FHA domain | 5 |
| FKBP | FKBP-type peptidyl-prolyl cis-trans isomerases | 3 |
| FMN_dh | FMN-dependent dehydrogenase | 5 |
| FMN_red | NADPH-dependent FMN reductase | 1 |
| FTHFS | Formate--tetrahydrofolate ligase | 1 |
| FTR1 | Iron permease FTR1 family | 1 |
| FYVE | FYVE zinc finger | 4 |
| F_actin_cap_B | F-actin capping protein, beta subunit | 1 |
| F_bP_aldolase | Fructose-bisphosphate aldolase class-II | 2 |
| Fasciclin | Fasciclin domain | 2 |
| Fatty_acid_hyrd | Fatty acid hydroxylase | 1 |
| Fe-ADH | Iron-containing alcohol dehydrogenases | 1 |
| Ferric_reduct | Ferric reductase like transmembrane component | 9 |
| Ferrochelatase | Ferrochelatase | 1 |
| Fibrillarin | Fibrillarin | 1 |
| Flavoprotein | Flavoprotein | 1 |
| FmdA_AmdA | Acetamidase/Formamidase family | 1 |
| Fork_head | Fork head domain | 1 |
| Frataxin_Cyay | Frataxin-like domain | 1 |
| Fructosamin_kin | Fructosamine kinase | 1 |
| FtsJ | FtsJ cell division protein | 3 |
| Fungal_trans | Fungal specific transcription factor domain | 51 |
| G-alpha | G-protein alpha subunit | 3 |
| G-patch | G-patch domain | 6 |
| G10 | G10 protein | 1 |
| G6PD | Glucose-6-phosphate dehydrogenase | 1 |
| G6PD_C | Glucose-6-phosphate dehydrogenase, C-terminal domain | 1 |
| GAS1 | Glycolipid anchored surface protein (GAS1) | 4 |
| GATA | GATA zinc finger | 7 |
| GATase | Glutamine amidotransferase class-I | 7 |
| GATase_2 | Glutamine amidotransferases class-II | 3 |
| GCS | Glutamate-cysteine ligase | 1 |
| GCV_H | Glycine cleavage H-protein | 1 |
| GCV_T | Glycine cleavage T-protein (aminomethyl transferase) | 1 |
| GDA1_CD39 | GDA1/CD39 (nucleoside phosphatase) family | 2 |
| GDC-P | Glycine cleavage system P-protein | 1 |
| GDI | GDP dissociation inhibitor | 1 |
| GDPD | Glycerophosphoryl diester phosphodiesterase | 2 |
| GED | Dynamin GTPase effector domain | 2 |
| GFO_IDH_MocA | Oxidoreductase family | 7 |
| GFO_IDH_MocA_C | Oxidoreductase family, C-terminal alpha/beta domain | 2 |
| GHMP_kinases | GHMP kinases putative ATP-binding proteins | 4 |
| GIDA | Glucose inhibited division protein A | 1 |
| GLFV_dehydrog | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | 2 |
| GLFV_dehydrog_N | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | 2 |
| GMC_oxred | GMC oxidoreductases | 15 |
| GMP_synt_C | GMP synthase C terminal domain | 1 |
| GNS1_SUR4 | GNS1/SUR4 family | 1 |
| GRAM | GRAM domain | 1 |
| GSHPx | Glutathione peroxidases | 1 |
| GSH_synth_ATP | Eukaryotic glutathione synthase, ATP binding domain | 1 |
| GSH_synthase | Eukaryotic glutathione synthase | 1 |
| GSP_synth | Glutathionylspermidine synthase | 2 |
| GST_C | Glutathione S-transferase, C-terminal domain | 3 |
| GST_N | Glutathione S-transferase, N-terminal domain | 5 |
| GTP1_OBG | GTP1/OBG family | 3 |
| GTP_CDC | Cell division protein | 4 |
| GTP_EFTU | Elongation factor Tu family | 12 |
| GTP_EFTU_D2 | Elongation factor Tu domain 2 | 9 |
| GTP_EFTU_D3 | Elongation factor Tu C-terminal domain | 3 |
| GTP_cyclohydro2 | GTP cyclohydrolase II | 1 |
| GTP_cyclohydroI | GTP cyclohydrolase I | 2 |
| G_glu_transpept | Gamma-glutamyltranspeptidase | 3 |
| Gaa1 | Gaa1-like, GPI transamidase component | 1 |
| GalP_UDP_tr_C | Galactose-1-phosphate uridyl transferase, C-terminal domain | 1 |
| GalP_UDP_transf | Galactose-1-phosphate uridyl transferase | 1 |
| Gamma-BBH | Gamma-butyrobetaine hydroxylase | 2 |
| GatB | PET112 family, C terminal region | 1 |
| GatB_N | PET112 family, N terminal region | 1 |
| Glu_synthase | Conserved region in glutamate synthase | 1 |
| Glucosamine_iso | Glucosamine-6-phosphate isomerase | 1 |
| Glutaminyl_cycl | Glutaminyl cyclase | 2 |
| Glyco_hydro_1 | Glycosyl hydrolase family 1 | 2 |
| Glyco_hydro_10 | Glycosyl hydrolase family 10 | 5 |
| Glyco_hydro_11 | Glycosyl hydrolases family 11 | 5 |
| Glyco_hydro_12 | Glycosyl hydrolase family 12 | 3 |
| Glyco_hydro_15 | Glycosyl hydrolases family 15 | 2 |
| Glyco_hydro_16 | Glycosyl hydrolases family 16 | 4 |
| Glyco_hydro_18 | Glycosyl hydrolases family 18 | 11 |
| Glyco_hydro_2 | Glycosyl hydrolases family 2 | 3 |
| Glyco_hydro_20 | Glycosyl hydrolase family 20 | 1 |
| Glyco_hydro_28 | Polygalacturonase (pectinase) | 2 |
| Glyco_hydro_2_C | Glycosyl hydrolases family 2, TIM barrel domain | 3 |
| Glyco_hydro_2_N | Glycosyl hydrolases family 2, sugar binding domain | 4 |
| Glyco_hydro_3 | Glycosyl hydrolase family 3 N terminal domain | 15 |
| Glyco_hydro_31 | Glycosyl hydrolases family 31 | 2 |
| Glyco_hydro_32 | Glycosyl hydrolases family 32 | 1 |
| Glyco_hydro_38 | Glycosyl hydrolases family 38 | 2 |
| Glyco_hydro_3_C | Glycosyl hydrolase family 3 C terminal domain | 14 |
| Glyco_hydro_45 | Glycosyl hydrolase family 45 | 1 |
| Glyco_hydro_47 | Glycosyl hydrolase family 47 | 6 |
| Glyco_hydro_6 | Glycosyl hydrolases family 6 | 3 |
| Glyco_hydro_61 | Glycosyl hydrolase family 61 | 9 |
| Glyco_hydro_62 | Glycosyl hydrolase family 62 | 6 |
| Glyco_hydro_63 | Mannosyl oligosaccharide glucosidase | 2 |
| Glyco_hydro_67 | Glycosyl hydrolase family 67 | 1 |
| Glyco_hydro_7 | Glycosyl hydrolase family 7 | 6 |
| Glyco_hydro_76 | Glycosyl hydrolase family 76 | 5 |
| Glyco_hydro_81 | Glycosyl hydrolase family 81 | 2 |
| Glyco_tran_28_C | Glycosyltransferase family 28 C-terminal domain | 1 |
| Glyco_transf_15 | Glycolipid 2-alpha-mannosyltransferase | 4 |
| Glyco_transf_20 | Glycosyltransferase family 20 | 3 |
| Glyco_transf_25 | Glycosyltransferase family 25 (LPS biosynthesis protein) | 1 |
| Glycos_transf_1 | Glycosyl transferases group 1 | 4 |
| Glycos_transf_2 | Glycosyl transferases | 2 |
| Glycos_transf_3 | glycosyl transferase family | 1 |
| Glycos_transf_4 | Glycosyl transferase | 1 |
| Glyoxalase | Glyoxalase | 3 |
| Gpi16 | Gpi16 subunit, GPI transamidase component | 1 |
| Grp1_Fun34_YaaH | GPR1/FUN34/yaaH family | 1 |
| GrpE | GrpE | 1 |
| Guanylate_kin | Guanylate kinase | 1 |
| HAMP | HAMP domain | 2 |
| HAT | HAT (Half-A-TPR) repeats | 1 |
| HATPase_c | Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase | 13 |
| HCCA_isomerase | 2-hydroxychromene-2-carboxylate isomerase family | 1 |
| HEAT | HEAT repeat | 3 |
| HEAT_PBS | PBS lyase HEAT-like repeat | 1 |
| HECT | HECT-domain (ubiquitin-transferase). | 5 |
| HGTP_anticodon | Anticodon binding domain | 4 |
| HHE | Domain of Unknown function | 1 |
| HIT | HIT family | 3 |
| HK | Hydroxyethylthiazole kinase family | 1 |
| HLH | Helix-loop-helix DNA-binding domain | 7 |
| HMA | Heavy-metal-associated domain | 4 |
| HMG-CoA_red | Hydroxymethylglutaryl-coenzyme A reductase | 1 |
| HMGL-like | HMGL-like | 4 |
| HMG_CoA_synt | Hydroxymethylglutaryl-coenzyme A synthase | 1 |
| HMG_box | HMG (high mobility group) box | 7 |
| HORMA | HORMA domain | 1 |
| HPPK | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) | 1 |
| HR1 | Hr1 repeat motif | 1 |
| HRDC | HRDC domain | 1 |
| HSF_DNA-bind | HSF-type DNA-binding domain | 3 |
| HSP20 | Hsp20/alpha crystallin family | 3 |
| HSP70 | Hsp70 protein | 4 |
| HSP90 | Hsp90 protein | 1 |
| Ham1p_like | Ham1 family | 1 |
| HesB-like | HesB-like domain | 1 |
| HgmA | homogentisate 1,2-dioxygenase | 1 |
| HhH-GPD | HhH-GPD superfamily base excision DNA repair protein | 3 |
| HisG | ATP phosphoribosyltransferase | 1 |
| HisKA | His Kinase A (phosphoacceptor) domain | 6 |
| His_biosynth | Histidine biosynthesis protein | 1 |
| Hist_deacetyl | Histone deacetylase family | 3 |
| Histidinol_dh | Histidinol dehydrogenase | 1 |
| HpcH_HpaI | HpcH/HpaI aldolase family | 1 |
| Hrf1 | Hrf1 family | 1 |
| Hus1 | Hus1-like protein | 1 |
| Hydantoinase_A | Hydantoinase/oxoprolinase | 1 |
| Hydantoinase_B | Hydantoinase B/oxoprolinase | 1 |
| Hydrolase | haloacid dehalogenase-like hydrolase | 19 |
| Hydrophobin | Fungal hydrophobin | 1 |
| HypB_UreG | HypB/UreG nucleotide-binding domain | 1 |
| IBB | Importin beta binding domain | 1 |
| IBN_NT | Importin-beta N-terminal domain | 4 |
| IBR | IBR domain | 1 |
| ICL | Isocitrate lyase | 2 |
| ICMT | Isoprenylcysteine carboxyl methyltransferase (ICMT) family | 1 |
| IF-2B | Initiation factor 2 subunit family | 1 |
| IF4E | Eukaryotic initiation factor 4E | 2 |
| IGPD | Imidazoleglycerol-phosphate dehydratase | 1 |
| IGPS | Indole-3-glycerol phosphate synthases | 1 |
| ILVD_EDD | Dehydratase family | 1 |
| IMP4 | Domain of unknown function | 2 |
| IMPDH | IMP dehydrogenase / GMP reductase | 1 |
| IMS | impB/mucB/samB family | 4 |
| INCENP_ARK-bind | Inner centromere protein, ARK binding region | 1 |
| IPPT | IPP transferase | 1 |
| IQ | IQ calmodulin-binding motif | 2 |
| IU_nuc_hydro | Inosine-uridine preferring nucleoside hydrolase | 2 |
| I_LWEQ | I/LWEQ domain | 1 |
| IlvC | Acetohydroxy acid isomeroreductase | 1 |
| Indigoidine_A | Indigoidine synthase A like protein | 1 |
| Init_tRNA_PT | Initiator tRNA phosphoribosyl transferase | 1 |
| Isochorismatase | Isochorismatase family | 2 |
| KA1 | Kinase associated domain 1 | 1 |
| KE2 | KE2 family protein | 2 |
| KH | KH domain | 2 |
| KOW | KOW motif | 3 |
| Kelch | Kelch motif | 11 |
| Ku_C | Ku70/Ku80 C-terminal arm | 1 |
| Ku_N | Ku70/Ku80 N-terminal alpha/beta domain | 2 |
| L15 | Ribosomal protein L15 | 1 |
| LACT | Lecithin:cholesterol acyltransferase | 1 |
| LAG1 | Longevity-assurance protein (LAG1) | 2 |
| LCM | Leucine carboxyl methyltransferase | 2 |
| LIM | LIM domain containing proteins | 4 |
| LMWPc | Low molecular weight phosphotyrosine protein phosphatase | 1 |
| LON | ATP-dependent protease La (LON) domain | 1 |
| LRR | Leucine Rich Repeat | 7 |
| LTV | Low temperature viability protein | 1 |
| LacAB_rpiB | Ribose/Galactose Isomerase | 1 |
| Las1 | Las1-like | 1 |
| Lectin_leg-like | Legume-like lectin family | 2 |
| Lipase_3 | Lipase | 5 |
| Lum_binding | Lumazine binding domain | 1 |
| LysM | LysM domain | 5 |
| MA3 | MA3 domain | 2 |
| MAM33 | Mitochondrial glycoprotein | 1 |
| MAP1_LC3 | Microtubule associated protein 1A/1B, light chain 3 | 1 |
| MAP65_ASE1 | Microtubule associated protein (MAP65/ASE1 family) | 1 |
| MAS20 | MAS20 protein import receptor | 1 |
| MATH | MATH domain | 1 |
| MBOAT | MBOAT family | 3 |
| MCM | MCM2/3/5 family | 6 |
| MGS | MGS-like domain | 2 |
| MIF4G | MIF4G domain | 4 |
| MIP | Major intrinsic protein | 4 |
| MIR | MIR domain | 2 |
| MMR_HSR1 | GTPase of unknown function | 4 |
| MOSC | MOSC domain | 3 |
| MOSC_N | MOSC N-terminal beta barrel domain | 2 |
| MOZ_SAS | MOZ/SAS family | 3 |
| MR_MLE | Mandelate racemase / muconate lactonizing enzyme family | 2 |
| MR_MLE_N | Mandelate racemase / muconate lactonizing enzyme, N-terminal domain | 1 |
| MS_channel | Mechanosensitive ion channel | 1 |
| MTHFR | Methylenetetrahydrofolate reductase | 2 |
| Maf | Maf-like protein | 1 |
| Mago_nashi | Mago nashi protein | 1 |
| Mak10 | Mak10 subunit, NatC N(alpha)-terminal acetyltransferase | 1 |
| Malate_synthase | Malate synthase | 1 |
| Mannitol_dh | Mannitol dehydrogenase | 2 |
| MaoC_dehydratas | MaoC like domain | 3 |
| Melibiase | Melibiase | 4 |
| Mer11_DNA_bind | Mer11 DNA-binding domain | 1 |
| Met_10 | Met-10+ like-proteins | 1 |
| Metalloenzyme | Metalloenzyme superfamily | 1 |
| Metallophos | Calcineurin-like phosphoesterase | 15 |
| Methionine_synt | Methionine synthase, vitamin-B12 independent | 1 |
| Methyltransf_1 | 6-O-methylguanine DNA methyltransferase | 1 |
| Methyltransf_2 | O-methyltransferase | 9 |
| Methyltransf_3 | O-methyltransferase | 1 |
| Methyltransf_4 | Putative methyltransferase | 1 |
| Methyltransf_6 | Dimethylmenaquinone methyltransferase | 1 |
| MmgE_PrpD | MmgE/PrpD family | 1 |
| Mo-co_dimer | Mo-co oxidoreductase dimerisation domain | 3 |
| Mo25 | Mo25 protein family | 1 |
| MoCF_biosynth | Molybdenum cofactor biosynthesis protein | 2 |
| MoaC | MoaC family | 1 |
| MoaE | MoaE protein | 1 |
| Mob1_phocein | Mob1/phocein family | 3 |
| MoeA_C | MoeA C-terminal region (domain IV) | 1 |
| MoeA_N | MoeA N-terminal region (domain I and II) | 2 |
| Monooxygenase | Monooxygenase | 38 |
| Mov34 | Mov34 family | 5 |
| Mpp10 | Mpp10 protein | 1 |
| Mpv17_PMP22 | Mpv17 / PMP22 family | 3 |
| Mra1 | Suppressor Mra1 | 1 |
| MscL | Large-conductance mechanosensitive channel, MscL | 1 |
| Mtap_PNP | phosphorylases family 2 | 1 |
| Mtc | Tricarboxylate carrier | 1 |
| MutS_C | DNA mismatch repair proteins, mutS family | 6 |
| MutS_N | MutS family, N-terminal putative DNA binding domain | 4 |
| NAC | NAC domain | 2 |
| NAD_Gly3P_dh | NAD-dependent glycerol-3-phosphate dehydrogenase | 1 |
| NAD_binding_1 | Oxidoreductase NAD-binding domain | 13 |
| NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase | 1 |
| NAD_kinase | ATP-NAD kinase | 3 |
| NAD_synthase | NAD synthase | 1 |
| NAP | Nucleosome assembly protein (NAP) | 1 |
| NAPRTase | Nicotinate phosphoribosyltransferase (NAPRTase) | 1 |
| NAS | Nicotianamine synthase protein | 1 |
| NDK | Nucleoside diphosphate kinases | 1 |
| NIC | Nucleoporin interacting componentent | 1 |
| NIF | NLI interacting factor | 4 |
| NIR_SIR | Nitrite and sulphite reductase | 2 |
| NIR_SIR_ferr | Nitrite/Sulfite reductase ferredoxin-like half domain | 2 |
| NMT | Myristoyl-CoA:protein N-myristoyltransferase | 1 |
| NMT_C | Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain | 1 |
| NOT | NOT2 / NOT3 / NOT5 family | 2 |
| NPD | 2-nitropropane dioxygenase | 5 |
| NTF2 | Nuclear transport factor 2 (NTF2) domain | 2 |
| NTP_transferase | Nucleotidyl transferase | 2 |
| NUDIX | MutT-like domain | 10 |
| Na_Ca_Ex | Sodium/calcium exchanger protein | 1 |
| Na_H_Exchanger | Sodium/hydrogen exchanger family | 3 |
| NagA | N-acetylglucosamine-6-phosphate deacetylase | 1 |
| Ndc80_HEC | HEC/Ndc80p family | 1 |
| NicO | High-affinity nickel-transport protein | 2 |
| NifU-like | NifU-like domain | 1 |
| NifU_N | NifU-like N terminal domain | 1 |
| Nol1_Nop2_Sun | NOL1/NOP2/sun family | 1 |
| Nop | Putative snoRNA binding domain | 2 |
| Nop10p | Nucleolar RNA-binding protein, Nop10p family | 1 |
| Nop14 | Nop14-like family | 1 |
| Not1 | CCR4-Not complex component, Not1 | 1 |
| Not3 | Not1 N-terminal domain, CCR4-Not complex component | 1 |
| Nrap | Nrap protein | 1 |
| Nuc_sug_transp | Nucleotide-sugar transporter | 1 |
| Nuclear_move | Nuclear movement protein | 1 |
| Nuclease | S1/P1 Nuclease | 1 |
| Nucleoporin | Non-repetitive/WGA-negative nucleoporin | 1 |
| Nucleoporin2 | Conserved nucleoporin domain | 1 |
| Nucleoside_tra2 | Na+ dependent nucleoside transporter | 1 |
| Nucleoside_tran | Nucleoside transporter | 1 |
| OMPdecase | Orotidine 5'-phosphate decarboxylases | 1 |
| OPT | OPT oligopeptide transporter protein | 6 |
| ORC2 | Origin recognition complex subunit 2 | 1 |
| ORMDL | ORMDL family | 1 |
| OSCP | ATP synthase delta (OSCP) subunit | 1 |
| OTCace | Aspartate/ornithine carbamoyltransferase | 2 |
| OTCace_N | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain | 2 |
| Octopine_DH | NAD/NADP octopine/nopaline dehydrogenase | 1 |
| Octopine_DH_N | NAD/NADP octopine/nopaline dehydrogenase, NAD binding domain | 1 |
| Orn_Arg_deC_N | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 1 |
| Orn_DAP_Arg_deC | Pyridoxal-dependent decarboxylase | 1 |
| Oxysterol_BP | Oxysterol-binding protein | 4 |
| P | Proprotein convertase P-domain | 1 |
| P21-Arc | P21-ARC (ARP2/3 complex 21 kDa subunit) | 1 |
| P5CR | Delta 1-pyrroline-5-carboxylate reductase | 3 |
| PA | PA domain | 11 |
| PABP | Poly-adenylate binding protein, unique domain. | 1 |
| PAC | PAC motif | 2 |
| PAF-AH_p_II | Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II | 1 |
| PAH | Paired amphipathic helix repeat | 1 |
| PAL | Phenylalanine and histidine ammonia-lyases | 1 |
| PALP | Pyridoxal-phosphate dependent enzyme | 7 |
| PAP2 | PAP2 superfamily | 6 |
| PAPS_reduct | Phosphoadenosine phosphosulfate reductase family | 1 |
| PAP_assoc | PAP/25A associated domain | 2 |
| PARP | Poly(ADP-ribose) polymerase catalytic region. | 1 |
| PARP_reg | Poly(ADP-ribose) polymerase, regulatory domain | 1 |
| PAZ | ZAP domain | 1 |
| PBD | P21-Rho-binding domain | 1 |
| PBP | Phosphatidylethanolamine-binding protein | 4 |
| PC4 | Transcriptional Coactivator p15 (PC4) | 1 |
| PCI | PCI domain | 10 |
| PCMT | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | 1 |
| PCNA | Proliferating cell nuclear antigen | 1 |
| PCNA_C | Proliferating cell nuclear antigen, C-terminal domain | 1 |
| PCRF | PCRF domain | 1 |
| PC_rep | Proteasome/cyclosome repeat | 2 |
| PDCD2_C | Programmed cell death protein 2, C-terminal domain | 1 |
| PDEase | 3'5'-cyclic nucleotide phosphodiesterase | 1 |
| PDEase_II | cAMP phosphodiesterases class-II | 1 |
| PDT | Prephenate dehydratase | 1 |
| PEMT | Phospholipid methyltransferase | 1 |
| PEPCK_ATP | Phosphoenolpyruvate carboxykinase | 1 |
| PFK | Phosphofructokinase | 1 |
| PGAM | Phosphoglycerate mutase family | 4 |
| PGK | Phosphoglycerate kinases | 1 |
| PGM_PMM | Phosphoglucomutase/phosphomannomutase | 1 |
| PGM_PMM_I | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 1 |
| PGM_PMM_II | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | 1 |
| PGM_PMM_III | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | 1 |
| PG_binding_1 | Putative peptidoglycan binding domain | 1 |
| PH | PH domain | 11 |
| PHD | PHD-finger | 9 |
| PHO4 | Phosphate transporter family | 3 |
| PI-PLC-X | Phosphatidylinositol-specific phospholipase C, X domain | 6 |
| PI-PLC-Y | Phosphatidylinositol-specific phospholipase C, Y domain | 5 |
| PI3K_C2 | C2 domain | 1 |
| PI3Ka | Phosphoinositide 3-kinase family, accessory domain (PIK domain) | 1 |
| PI3_PI4_kinase | Phosphatidylinositol 3- and 4-kinases | 5 |
| PIP5K | Phosphatidylinositol-4-phosphate 5-Kinase | 1 |
| PK | Pyruvate kinase | 1 |
| PK_C | Pyruvate kinase, alpha/beta domain | 1 |
| PLA2_B | Lysophospholipase catalytic domain | 1 |
| PLDc | Phospholipase D. Active site motif | 3 |
| PMI_typeI | Phosphomannose isomerase type I | 1 |
| PMM | Eukaryotic phosphomannomutase | 1 |
| PMP | Plasmid Maintenance Protein | 1 |
| PMSR | Peptide methionine sulfoxide reductase | 1 |
| PMT | Dolichyl-phosphate-mannose-protein mannosyltransferase | 2 |
| PNTB | NAD(P) transhydrogenase beta subunit | 1 |
| PP2C | Protein phosphatase 2C | 5 |
| PPR | PPR repeat | 4 |
| PPTA | Protein prenyltransferase alpha subunit | 2 |
| PQ-loop | PQ loop repeat | 4 |
| PRA-CH | Phosphoribosyl-AMP cyclohydrolase | 1 |
| PRA-PH | Phosphoribosyl-ATP pyrophosphohydrolase | 1 |
| PRA1 | Prenylated rab acceptor (PRA1) | 1 |
| PRAI | N-(5'phosphoribosyl)anthranilate (PRA) isomerase | 1 |
| PRP38 | PRP38 family | 1 |
| PSP | PSP | 1 |
| PS_Dcarbxylase | Phosphatidylserine decarboxylase | 2 |
| PTPA | Phosphotyrosyl phosphate activator (PTPA) protein | 2 |
| PTR2 | POT family | 3 |
| PUA | PUA domain | 2 |
| PUF | Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) | 5 |
| PWI | PWI domain | 2 |
| PWP2 | Periodic tryptophan protein 2 WD repeat associated domain | 1 |
| PWWP | PWWP domain | 1 |
| PX | PX domain | 9 |
| PXA | Domain associated with PX domains | 2 |
| PYC_OADA | Conserved carboxylase domain | 1 |
| Palm_thioest | Palmitoyl protein thioesterase | 1 |
| Pantoate_ligase | Pantoate-beta-alanine ligase | 1 |
| Pantoate_transf | Ketopantoate hydroxymethyltransferase | 1 |
| Patatin | Patatin | 3 |
| Pectate_lyase | Pectate lyase | 1 |
| Pectinesterase | Pectinesterase | 1 |
| Pept_C1-like | Peptidase C1-like family | 1 |
| Pept_tRNA_hydro | Peptidyl-tRNA hydrolase | 1 |
| Peptidase_A4 | Peptidase A4 family | 2 |
| Peptidase_C12 | Ubiquitin carboxyl-terminal hydrolase, family 1 | 2 |
| Peptidase_C13 | Peptidase C13 family | 1 |
| Peptidase_C2 | Calpain family cysteine protease | 3 |
| Peptidase_C48 | Ulp1 protease family, C-terminal catalytic domain | 3 |
| Peptidase_C50 | Peptidase family C50 | 1 |
| Peptidase_C54 | Peptidase family C54 | 1 |
| Peptidase_M1 | Peptidase family M1 | 3 |
| Peptidase_M13 | Peptidase family M13 | 1 |
| Peptidase_M16 | Insulinase (Peptidase family M16) | 4 |
| Peptidase_M18 | Aminopeptidase I zinc metalloprotease (M18) | 2 |
| Peptidase_M20 | Peptidase family M20/M25/M40 | 7 |
| Peptidase_M22 | Glycoprotease family | 2 |
| Peptidase_M24 | metallopeptidase family M24 | 7 |
| Peptidase_M3 | Peptidase family M3 | 2 |
| Peptidase_M35 | Deuterolysin metalloprotease (M35) family | 2 |
| Peptidase_M41 | Peptidase family M41 | 2 |
| Peptidase_M48 | Peptidase family M48 | 1 |
| Peptidase_M49 | Peptidase family M49 | 2 |
| Peptidase_M4_C | Thermolysin metallopeptidase, alpha-helical domain | 1 |
| Peptidase_S26 | Signal peptidase I | 1 |
| Peptidase_S8 | Subtilase family | 22 |
| Peptidase_S9 | Prolyl oligopeptidase family | 2 |
| Peptidase_T4 | Peptidase family T4 | 1 |
| Per1 | Per1-like | 1 |
| Peroxin-13_N | Peroxin 13, N-terminal domain | 1 |
| Phage_lysozyme | Lysozyme | 1 |
| Phosphoesterase | Phosphoesterase family | 1 |
| Phytase | Phytase | 1 |
| Piwi | Piwi domain | 3 |
| Plus-3 | Plus-3 domain | 1 |
| PolyA_pol | Poly A polymerase family | 1 |
| Polysacc_deacet | Polysaccharide deacetylase | 9 |
| Porphobil_deam | Porphobilinogen deaminase | 1 |
| Porphobil_deamC | Porphobilinogen deaminase, C-terminal domain | 1 |
| Pribosyltran | Phosphoribosyl transferase domain | 6 |
| Pro_CA | Prokaryotic-type carbonic anhydrases | 3 |
| Pro_dh | Proline dehydrogenase | 1 |
| Prp18 | Prp18 domain | 1 |
| PseudoU_synth_1 | tRNA pseudouridine synthase | 2 |
| PseudoU_synth_2 | RNA pseudouridylate synthase | 1 |
| Pterin_4a | Pterin 4 alpha carbinolamine dehydratase | 1 |
| Pterin_bind | Pterin binding enzyme | 1 |
| Pyridox_oxidase | Pyridoxamine 5'-phosphate oxidase | 1 |
| Pyrophosphatase | Inorganic pyrophosphatase | 1 |
| QRPTase | Quinolinate phosphoribosyl transferase | 1 |
| QRPTase_N | Quinolinate phosphoribosyl transferase, N-terminal domain | 1 |
| R3H | R3H domain | 3 |
| RA | Ras association (RalGDS/AF-6) domain | 1 |
| RCC1 | Regulator of chromosome condensation (RCC1) | 2 |
| RF-1 | Prokaryotic-type class I peptide chain release factors | 2 |
| RFX_DNA_binding | RFX DNA-binding domain | 1 |
| RLI | Possible metal-binding domain in RNase L inhibitor, RLI | 1 |
| RNA_POL_M_15KD | RNA polymerases M/15 Kd subunits | 2 |
| RNA_pol_A | RNA polymerase alpha subunit | 3 |
| RNA_pol_A2 | RNA polymerase A/beta'/A" subunit | 3 |
| RNA_pol_B | RNA polymerase beta subunit | 3 |
| RNA_pol_L | RNA polymerases L / 13 to 16 kDa subunit | 2 |
| RNA_pol_N | RNA polymerases N / 8 kDa subunit | 1 |
| RNA_pol_Rpb4 | RNA polymerase Rpb4 | 1 |
| RNA_pol_Rpb5_C | RNA polymerase Rpb5, C-terminal domain | 1 |
| RNA_pol_Rpb5_N | RNA polymerase Rpb5, N-terminal domain | 1 |
| RNA_pol_Rpb6 | RNA polymerase Rpb6 | 1 |
| RNA_pol_Rpb7_N | RNA polymerase Rpb7, N-terminal domain | 2 |
| RNA_pol_Rpb8 | RNA polymerase Rpb8 | 1 |
| RNB | RNB-like proteins | 2 |
| RNase_HII | Ribonuclease HII | 1 |
| RNase_PH | 3' exoribonuclease family | 3 |
| RNase_P_p30 | RNase P subunit p30 | 1 |
| RPE65 | Retinal pigment epithelial membrane protein | 3 |
| RPEL | RPEL repeat | 1 |
| RTC | RNA 3'-terminal phosphate cyclase | 1 |
| Rad1 | Repair protein Rad1/Rec1/Rad17 | 1 |
| Rad10 | DNA repair protein rad10 | 1 |
| Rad4 | DNA repair protein Rad4 | 2 |
| Rad52_Rad22 | Rad52/22 family double-strand break repair protein | 1 |
| Radical_SAM | Radical SAM superfamily | 2 |
| Ran_BP1 | RanBP1 domain. | 2 |
| Rap_GAP | Rap/ran-GAP | 1 |
| RasGAP | GTPase-activator protein for Ras-like GTPase | 3 |
| RasGAP_C | RasGAP C-terminus | 1 |
| RasGEF | RasGEF domain | 4 |
| RasGEFN | Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif | 2 |
| Rcd1 | Cell differentiation family, Rcd1-like | 1 |
| Renal_dipeptase | Renal dipeptidase | 2 |
| Rep-A_N | Replication factor-A protein 1, N-terminal domain | 1 |
| Rer1 | Rer1 family | 1 |
| Retrotrans_gag | Retrotransposon gag protein | 22 |
| RhoGAP | RhoGAP domain | 7 |
| RhoGEF | RhoGEF domain | 3 |
| Rho_GDI | RHO protein GDP dissociation inhibitor | 1 |
| Rhodanese | Rhodanese-like domain | 5 |
| Rhomboid | Rhomboid family | 3 |
| RibD_C | RibD C-terminal domain | 1 |
| Ribonuclease_3 | RNase3 domain. | 3 |
| Ribosomal_L1 | L1P family of ribosomal proteins | 2 |
| Ribosomal_L10 | Ribosomal protein L10 | 2 |
| Ribosomal_L10e | Ribosomal L10 | 1 |
| Ribosomal_L11 | Ribosomal protein L11 | 2 |
| Ribosomal_L11_N | Ribosomal protein L11, N-terminal domain | 2 |
| Ribosomal_L12 | Ribosomal protein L7/L12 C-terminal domain | 1 |
| Ribosomal_L13 | Ribosomal protein L13 | 2 |
| Ribosomal_L13e | Ribosomal protein L13e | 1 |
| Ribosomal_L14 | Ribosomal protein L14 | 2 |
| Ribosomal_L14e | Ribosomal protein L14 | 1 |
| Ribosomal_L15 | Ribosomal protein L15 amino terminal region | 1 |
| Ribosomal_L16 | Ribosomal protein L16 | 1 |
| Ribosomal_L17 | Ribosomal protein L17 | 1 |
| Ribosomal_L18ae | Ribosomal L18ae protein family | 1 |
| Ribosomal_L18e | Eukaryotic ribosomal protein L18 | 1 |
| Ribosomal_L18p | Ribosomal L18p/L5e family | 1 |
| Ribosomal_L19 | Ribosomal protein L19 | 1 |
| Ribosomal_L19e | Ribosomal protein L19e | 1 |
| Ribosomal_L2 | Ribosomal Proteins L2 | 1 |
| Ribosomal_L22 | Ribosomal protein L22 | 1 |
| Ribosomal_L22e | Ribosomal L22e protein family | 1 |
| Ribosomal_L23 | Ribosomal protein L23 | 1 |
| Ribosomal_L23eN | Ribosomal protein L23, N-terminal domain | 1 |
| Ribosomal_L24e | Ribosomal protein L24e | 1 |
| Ribosomal_L27 | Ribosomal L27 protein | 1 |
| Ribosomal_L27e | Ribosomal L27e protein family | 1 |
| Ribosomal_L28 | Ribosomal L28 family | 1 |
| Ribosomal_L28e | Ribosomal L28e protein family | 1 |
| Ribosomal_L29 | Ribosomal L29 protein | 1 |
| Ribosomal_L29e | Ribosomal L29e protein family | 1 |
| Ribosomal_L2_C | Ribosomal Proteins L2, C-terminal domain | 1 |
| Ribosomal_L3 | Ribosomal protein L3 | 1 |
| Ribosomal_L30 | Ribosomal protein L30p/L7e | 1 |
| Ribosomal_L31e | Ribosomal protein L31e | 1 |
| Ribosomal_L32e | Ribosomal protein L32 | 1 |
| Ribosomal_L34e | Ribosomal protein L34e | 1 |
| Ribosomal_L35Ae | Ribosomal protein L35Ae | 1 |
| Ribosomal_L36 | Ribosomal protein L36 | 1 |
| Ribosomal_L36e | Ribosomal protein L36e | 1 |
| Ribosomal_L37ae | Ribosomal L37ae protein family | 1 |
| Ribosomal_L37e | Ribosomal protein L37e | 1 |
| Ribosomal_L38e | Ribosomal L38e protein family | 1 |
| Ribosomal_L4 | Ribosomal protein L4/L1 family | 2 |
| Ribosomal_L40e | Ribosomal L40e family | 1 |
| Ribosomal_L44 | Ribosomal protein L44 | 1 |
| Ribosomal_L5 | Ribosomal protein L5 | 1 |
| Ribosomal_L5_C | ribosomal L5P family C-terminus | 1 |
| Ribosomal_L6 | Ribosomal protein L6 | 2 |
| Ribosomal_L6e | Ribosomal protein L6e | 1 |
| Ribosomal_L7Ae | Ribosomal protein L7Ae | 5 |
| Ribosomal_S10 | Ribosomal protein S10p/S20e | 1 |
| Ribosomal_S11 | Ribosomal protein S11 | 1 |
| Ribosomal_S12 | Ribosomal protein S12 | 2 |
| Ribosomal_S13 | Ribosomal protein S13/S18 | 2 |
| Ribosomal_S14 | Ribosomal protein S14p/S29e | 2 |
| Ribosomal_S15 | Ribosomal protein S15 | 2 |
| Ribosomal_S16 | Ribosomal protein S16 | 1 |
| Ribosomal_S17 | Ribosomal protein S17 | 2 |
| Ribosomal_S17e | Ribosomal S17 | 1 |
| Ribosomal_S19 | Ribosomal protein S19 | 2 |
| Ribosomal_S19e | Ribosomal protein S19e | 1 |
| Ribosomal_S2 | Ribosomal protein S2 | 1 |
| Ribosomal_S21e | Ribosomal protein S21e | 1 |
| Ribosomal_S24e | Ribosomal protein S24e | 1 |
| Ribosomal_S25 | S25 ribosomal protein | 1 |
| Ribosomal_S26e | Ribosomal protein S26e | 1 |
| Ribosomal_S27e | Ribosomal protein S27 | 1 |
| Ribosomal_S28e | Ribosomal protein S28e | 1 |
| Ribosomal_S3Ae | Ribosomal S3Ae family | 1 |
| Ribosomal_S3_C | Ribosomal protein S3, C-terminal domain. | 1 |
| Ribosomal_S4 | Ribosomal protein S4/S9 N-terminal domain | 2 |
| Ribosomal_S4e | Ribosomal family S4e | 1 |
| Ribosomal_S5 | Ribosomal protein S5 | 2 |
| Ribosomal_S5_C | Ribosomal protein S5, C-terminal domain | 2 |
| Ribosomal_S6e | Ribosomal protein S6e | 1 |
| Ribosomal_S7 | Ribosomal protein S7p/S5e | 1 |
| Ribosomal_S7e | Ribosomal protein S7e | 1 |
| Ribosomal_S8 | Ribosomal protein S8 | 1 |
| Ribosomal_S8e | Ribosomal protein S8e | 1 |
| Ribosomal_S9 | Ribosomal protein S9/S16 | 2 |
| Ribul_P_3_epim | Ribulose-phosphate 3 epimerase family | 1 |
| Rieske | Rieske [2Fe-2S] domain | 3 |
| Rotamase | PPIC-type PPIASE domain. | 1 |
| RrnaAD | Ribosomal RNA adenine dimethylases | 1 |
| S-AdoMet_synt | S-adenosylmethionine synthetase | 1 |
| S-AdoMet_syntD2 | S-adenosylmethionine synthetase, central domain | 1 |
| S-AdoMet_syntD3 | S-adenosylmethionine synthetase, C-terminal domain | 1 |
| S1 | S1 RNA binding domain | 3 |
| S10_plectin | Plectin/S10 domain | 1 |
| S4 | S4 domain | 3 |
| SAC3_GANP | SAC3/GANP family | 2 |
| SAICAR_synt | SAICAR synthetase | 1 |
| SAM | SAM domain (Sterile alpha motif) | 3 |
| SAM_decarbox | Adenosylmethionine decarboxylase | 1 |
| SAP | SAP domain | 4 |
| SART-1 | SART-1 family | 1 |
| SBF | Sodium Bile acid symporter family | 1 |
| SBP_bac_3 | Bacterial extracellular solute-binding proteins, family 3 | 1 |
| SCO1-SenC | SCO1/SenC | 1 |
| SCP | SCP-like extracellular protein | 4 |
| SCP2 | SCP-2 sterol transfer family | 1 |
| SDF | Sodium:dicarboxylate symporter family | 1 |
| SET | SET domain | 8 |
| SH3 | SH3 domain | 14 |
| SHD1 | SLA1 homology domain 1, SHD1 | 1 |
| SHMT | Serine hydroxymethyltransferase | 1 |
| SIR2 | Sir2 family | 8 |
| SKI | Shikimate kinase | 1 |
| SKIP_SNW | SKIP/SNW domain | 1 |
| SMC_C | SMC family, C-terminal domain | 4 |
| SMC_N | SMC domain N terminal domain | 4 |
| SMP-30 | Senescence marker protein-30 (SMP-30) | 3 |
| SNF | Sodium:neurotransmitter symporter family | 3 |
| SNF2_N | SNF2 and others N-terminal domain | 20 |
| SNO | SNO glutamine amidotransferase family | 1 |
| SNase | Staphylococcal nuclease homologues | 1 |
| SOR_SNZ | SOR/SNZ family | 1 |
| SPRY | SPRY domain | 2 |
| SPX | SPX domain | 2 |
| SQS_PSY | Squalene and phytoene synthases | 1 |
| SRF-TF | SRF-type transcription factor (DNA-binding and dimerisation domain) | 1 |
| SRP-alpha_N | Signal recognition particle, alpha subunit, N-terminal | 1 |
| SRP19 | SRP19 protein | 1 |
| SRP54 | SRP54-type protein | 2 |
| SRP54_N | SRP54-type protein, helical bundle domain | 1 |
| SRP_SPB | Signal peptide binding domain | 1 |
| SSB | Single-strand binding protein family | 1 |
| SSF1 | Second step splicing factor 1 | 1 |
| SSrecog | Structure-specific recognition protein | 1 |
| STAS | STAS domain | 2 |
| STT3 | Oligosaccharyl transferase STT3 subunit | 1 |
| SUA5 | SUA5 domain | 1 |
| SUI1 | Translation initiation factor SUI1 | 1 |
| SUN | SUN family | 1 |
| SURF1 | SURF1 family | 1 |
| SURF4 | SURF4 family | 1 |
| SWIB | BAF60b domain of the SWIB complex | 1 |
| Saccharop_dh | Saccharopine dehydrogenase | 1 |
| Sas10_Utp3 | Sas10/Utp3 family | 1 |
| Scytalone_DH | Scytalone dehydratase | 1 |
| Sdh_cyt | Succinate dehydrogenase cytochrome b subunit | 1 |
| Sec1 | Sec1 family | 3 |
| Sec15 | Exocyst complex subunit Sec15-like | 1 |
| Sec20 | Sec20 | 1 |
| Sec23_Sec24 | Sec23/Sec24 family | 1 |
| Sec34 | Sec34-like family | 1 |
| Sec61_beta | Sec61beta family | 1 |
| Sec62 | Translocation protein Sec62 | 1 |
| Sec63 | Sec63 domain | 2 |
| Sec7 | Sec7 domain | 3 |
| Sec8_exocyst | Sec8 exocyst complex component specific domain | 1 |
| SecE | SecE/Sec61-gamma subunits of protein translocation complex | 1 |
| SelR | SelR domain | 1 |
| Semialdhyde_dh | Semialdehyde dehydrogenase | 2 |
| Semialdhyde_dhC | Semialdehyde dehydrogenase, dimerisation domain | 2 |
| Shikimate_DH | Shikimate / quinate 5-dehydrogenase | 3 |
| Skp1 | Skp1 family | 1 |
| Skp1_POZ | Skp1 family, tetramerisation domain | 1 |
| Sm | Sm protein | 13 |
| Smr | Smr domain | 1 |
| Sof1 | Sof1-like domain | 1 |
| Spc97_Spc98 | Spc97 / Spc98 family | 2 |
| Spermine_synth | Spermine/spermidine synthase | 1 |
| Spo7 | Spo7-like protein | 1 |
| SpoU_methylase | SpoU rRNA Methylase family | 1 |
| Ssl1 | Ssl1-like | 1 |
| Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 1 |
| Sterol_desat | Sterol desaturase | 4 |
| Sua5_yciO_yrdC | SUA5/yciO/yrdC family | 1 |
| Sulfatase | Sulfatase | 4 |
| Sulfate_transp | Sulfate transporter family | 5 |
| SurE | Survival protein SurE | 2 |
| Surp | Surp module | 1 |
| Sybindin | Sybindin-like family | 2 |
| Syja_N | SacI homology domain | 4 |
| Syntaxin | Syntaxin | 4 |
| TAF | TATA box binding protein associated factor (TAF) | 1 |
| TAP42 | TAP42-like family | 1 |
| TAP_C | TAP C-terminal domain | 1 |
| TB2_DP1_HVA22 | TB2/DP1, HVA22 family | 1 |
| TBC | TBC domain | 11 |
| TBP | Transcription factor TFIID (or TATA-binding protein, TBP) | 1 |
| TCTP | Translationally controlled tumor protein | 1 |
| TENA_THI-4 | TENA/THI-4 family | 1 |
| TFIIA | Transcription factor IIA, alpha/beta subunit | 1 |
| TFIIA_gamma | Transcription initiation factor IIA, gamma subunit | 1 |
| TFIIA_gamma_C | Transcription initiation factor IIA, gamma subunit, beta-barrel domain | 1 |
| TFIID-18 | Transcription initiation factor IID, 18kD subunit | 2 |
| TFIID-31 | Transcription initiation factor IID, 31kD subunit | 1 |
| TFIID_30kD | Transcription initiation factor TFIID 23-30kDa subunit | 1 |
| TFIID_A | Transcription initiation factor TFIID subunit A | 1 |
| TFIIE_alpha | TFIIE alpha subunit | 1 |
| TFIIF_beta | Transcription initiation factor IIF, beta subunit | 1 |
| TFIIS | Transcription factor S-II (TFIIS) | 2 |
| TGS | TGS domain | 3 |
| TGT | Queuine tRNA-ribosyltransferase | 1 |
| THF_DHG_CYH | Tetrahydrofolate dehydrogenase/cyclohydrolase | 2 |
| THF_DHG_CYH_C | Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain | 2 |
| TIG | IPT/TIG domain | 1 |
| TIM | Triosephosphate isomerase | 2 |
| TIP41 | TIP41-like family | 1 |
| TMP-TENI | Thiamine monophosphate synthase/TENI | 1 |
| TMS_TDE | TMS membrane protein/tumour differentially expressed protein (TDE) | 1 |
| TPK_B1_binding | Thiamin pyrophosphokinase, vitamin B1 binding domain | 1 |
| TPK_catalytic | Thiamin pyrophosphokinase, catalytic domain | 1 |
| TPP_enzymes | Thiamine pyrophosphate enzymes | 3 |
| TPP_enzymes_C | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 3 |
| TPP_enzymes_N | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 4 |
| TPR | TPR Domain | 22 |
| TP_methylase | Tetrapyrrole (Corrin/Porphyrin) Methylases. | 2 |
| TRAPP_Bet3 | Transport protein particle (TRAPP) component, Bet3 | 2 |
| TRM | N2,N2-dimethylguanosine tRNA methyltransferase | 1 |
| TTL | Tubulin-tyrosine ligase family | 1 |
| TatD_DNase | TatD related DNase | 2 |
| TauD | Taurine catabolism dioxygenase TauD, TfdA family | 1 |
| Tfb2 | Transcription factor Tfb2 | 1 |
| Tfb4 | Transcription factor Tfb4 | 1 |
| Thi4 | Thi4 family | 1 |
| ThiF | ThiF family | 8 |
| Thioesterase | Thioesterase domain | 3 |
| Thr_dehydrat_C | C-terminal domain of Threonine dehydratase | 1 |
| Thymidylate_kin | Thymidylate kinase | 1 |
| Tim17 | Mitochondrial import inner membrane translocase subunit Tim7 | 2 |
| Tom22 | Mitochondrial import receptor subunit Tom22 | 1 |
| Topoisomer_I_N | Eukaryotic DNA topoisomerase I, DNA binding fragment | 1 |
| Topoisomerase_I | Eukaryotic DNA topoisomerase I | 1 |
| Transaldolase | Transaldolase | 1 |
| Transglut_core | Transglutaminase-like superfamily | 1 |
| Translin | Translin family | 2 |
| Transp_cyt_pur | Permeases for cytosine/purines, uracil, thiamine, allantoin | 5 |
| Trehalase | Trehalase | 2 |
| Trehalose_PPase | Trehalose-phosphatase | 2 |
| TrkH | Sodium transport protein | 4 |
| TruB_N | TruB family pseudouridylate synthase (N terminal domain) | 1 |
| TspO_MBR | TspO/MBR family | 1 |
| UBA | UBA domain | 3 |
| UBACT | Repeat in ubiquitin-activating (UBA) protein | 3 |
| UBX | UBX domain | 1 |
| UCH-1 | Ubiquitin carboxyl-terminal hydrolases family 2 | 9 |
| UCH-2 | Ubiquitin carboxyl-terminal hydrolase family 2 | 11 |
| UCR_14kD | Ubiquinol-cytochrome C reductase complex 14kD subunit | 1 |
| UCR_TM | Ubiquinol cytochrome reductase transmembrane region | 1 |
| UDG | Uracil DNA glycosylase superfamily | 1 |
| UDPGP | UTP--glucose-1-phosphate uridylyltransferase | 2 |
| UFD1 | Ubiquitin fusion degradation protein UFD1 | 1 |
| UIM | Ubiquitin interaction motif | 1 |
| UPF0001 | Uncharacterized protein family UPF0001 | 1 |
| UPF0005 | Uncharacterized protein family | 1 |
| UPF0013 | Uncharacterized membrane protein family | 3 |
| UPF0020 | Uncharacterized protein family UPF0020 | 1 |
| UPF0021 | Uncharacterized protein family UPF0021 | 1 |
| UPF0023 | Uncharacterized protein family UPF0023 | 1 |
| UPF0024 | Uncharacterized protein family UPF0024 | 1 |
| UPF0029 | Uncharacterized protein family UPF0029 | 2 |
| UPF0041 | Uncharacterised protein family (UPF0041) | 3 |
| UPF0047 | Uncharacterised protein family | 1 |
| UPF0057 | Uncharacterized protein family | 4 |
| UPF0061 | Uncharacterized ACR, YdiU/UPF0061 family | 1 |
| UPF0073 | Uncharacterised protein family (Hly-III / UPF0073) | 3 |
| UPF0080 | Uncharacterised protein family (UPF0080) | 1 |
| UPF0099 | Domain of unknown function UPF0099 | 1 |
| UPF0103 | Protein of unknown function DUF52 | 1 |
| UPF0108 | Uncharacterised protein family (UPF0108) | 1 |
| UPF0120 | Uncharacterised protein family (UPF0120) | 1 |
| UPF0123 | Uncharacterised protein family (UPF0123) | 1 |
| UPF0136 | Uncharacterised protein family (UPF0136) | 1 |
| UPF0143 | Uncharacterised protein family (UPF0143) | 1 |
| UPF0160 | Uncharacterised protein family (UPF0160) | 1 |
| UPF0170 | Uncharacterised protein family (UPF0170) | 1 |
| UPP_synthetase | Putative undecaprenyl diphosphate synthase | 1 |
| UQ_con | Ubiquitin-conjugating enzyme | 16 |
| URO-D | Uroporphyrinogen decarboxylase (URO-D) | 1 |
| UbiA | UbiA prenyltransferase family | 2 |
| Ubie_methyltran | ubiE/COQ5 methyltransferase family | 1 |
| Ubiq_cyt_C_chap | Ubiquinol-cytochrome C chaperone | 1 |
| UcrQ | UcrQ family | 1 |
| Upf2 | Up-frameshift suppressor 2 | 1 |
| UreD | UreD urease accessory protein | 1 |
| Urease_beta | Urease beta subunit. | 1 |
| Ureidogly_hydro | Ureidoglycolate hydrolase | 1 |
| Uricase | Uricase | 1 |
| Utp11 | Utp11 protein | 1 |
| Utp12 | Dip2/Utp12 Family | 1 |
| Utp21 | Utp21 specific WD40 associated domain | 1 |
| UvdE | UV-endonuclease UvdE | 1 |
| UvrD-helicase | UvrD/REP helicase | 1 |
| V-ATPase_C | V-ATPase subunit C | 1 |
| V-ATPase_G | Vacuolar (H+)-ATPase G subunit | 1 |
| V-ATPase_H | V-ATPase subunit H | 1 |
| VHS | VHS domain | 4 |
| VPS28 | VPS28 protein | 1 |
| VPS9 | Vacuolar sorting protein 9 (VPS9) domain | 3 |
| V_ATPase_sub_a | V-type ATPase 116kDa subunit family | 1 |
| Vps26 | Vacuolar protein sorting-associated protein 26 | 1 |
| Vps35 | Vacuolar protein sorting-associated protein 35 | 1 |
| Vps36 | Vacuolar protein sorting 36 | 1 |
| Vps52 | Vps52 / Sac2 family | 1 |
| Vps53_N | Vps53-like, N-terminal domain | 1 |
| Vps55 | Vacuolar protein sorting 55 | 1 |
| W2 | eIF4-gamma/eIF5/eIF2-epsilon | 2 |
| WD40 | WD domain, G-beta repeat | 86 |
| WH1 | WH1 domain | 1 |
| WSC | WSC domain | 7 |
| WW | WW domain | 9 |
| XFP | D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase | 1 |
| XPA | XPA protein | 1 |
| XPG_I | XPG I-region | 4 |
| XPG_N | XPG N-terminal domain | 3 |
| YDG_SRA | YDG/SRA domain | 1 |
| YEATS | YEATS family | 2 |
| YT521-B | YT521-B-like family | 2 |
| Y_phosphatase | Protein-tyrosine phosphatase | 2 |
| Yeast_DNA_bind | Yeast DNA-binding domain | 3 |
| Yippee | Yippee putative zinc-binding protein | 2 |
| YjeF_N | YjeF-related protein N-terminus | 2 |
| ZPR1 | ZPR1 zinc-finger domain | 1 |
| ZZ | Zinc finger present in dystrophin, CBP/p300 | 2 |
| Zip | ZIP Zinc transporter | 7 |
| Zn_carbOpept | Zinc carboxypeptidase | 7 |
| Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 54 |
| aa_permeases | Amino acid permease | 12 |
| aakinase | Amino acid kinase family | 3 |
| abhydro_lipase | ab-hydrolase associated lipase region | 1 |
| abhydrolase | alpha/beta hydrolase fold | 18 |
| abhydrolase_2 | Phospholipase/Carboxylesterase | 2 |
| acid_phosphat | Histidine acid phosphatase | 6 |
| aconitase | Aconitase family (aconitate hydratase) | 5 |
| actin | Actin | 6 |
| adenylatekinase | Adenylate kinase | 3 |
| adh_short | short chain dehydrogenase | 80 |
| adh_zinc | Zinc-binding dehydrogenases | 50 |
| aldedh | Aldehyde dehydrogenase family | 14 |
| aldo_ket_red | Aldo/keto reductase family | 20 |
| alk_phosphatase | Alkaline phosphatase | 3 |
| alpha-amylase | Alpha amylase | 8 |
| aminotran_1_2 | Aminotransferase class I and II | 8 |
| aminotran_3 | Aminotransferases class-III pyridoxal-phosphate | 6 |
| aminotran_4 | Aminotransferase class IV | 3 |
| aminotran_5 | Aminotransferases class-V | 3 |
| ank | Ank repeat | 50 |
| annexin | Annexin | 1 |
| arf | ADP-ribosylation factor family | 6 |
| arginase | Arginase family | 4 |
| asp | Eukaryotic aspartyl protease | 13 |
| bZIP | bZIP transcription factor | 7 |
| biotin_lipoyl | Biotin-requiring enzymes | 8 |
| bromodomain | Bromodomain | 5 |
| cNMP_binding | Cyclic nucleotide-binding domain | 4 |
| calreticulin | Calreticulin family | 1 |
| carb_anhydrase | Eukaryotic-type carbonic anhydrase | 1 |
| catalase | Catalase | 2 |
| cdc48_N | Cell division protein 48 (CDC48), N-terminal domain | 1 |
| cellulase | Cellulase (glycosyl hydrolase family 5) | 5 |
| chorismate_bind | chorismate binding enzyme | 1 |
| chromo | 'chromo' (CHRromatin Organization MOdifier) domain | 6 |
| citrate_synt | Citrate synthase | 2 |
| cobW | Cobalamin synthesis protein/P47K | 2 |
| cofilin_ADF | Cofilin/tropomyosin-type actin-binding proteins | 3 |
| complex1_24kD | Respiratory-chain NADH dehydrogenase 24 Kd subunit | 1 |
| complex1_30Kd | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | 1 |
| complex1_49Kd | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | 1 |
| cpn60_TCP1 | TCP-1/cpn60 chaperonin family | 8 |
| cyclin | Cyclin | 4 |
| cyclin_C | Cyclin, C-terminal domain | 2 |
| cytochrome_c | Cytochrome c | 1 |
| dCMP_cyt_deam | Cytidine and deoxycytidylate deaminase zinc-binding region | 3 |
| dDENN | dDENN domain | 1 |
| dUTPase | dUTPase | 1 |
| dfp | DNA / pantothenate metabolism flavoprotein | 1 |
| disintegrin | Disintegrin | 2 |
| dynamin | Dynamin family | 9 |
| dynamin_2 | Dynamin central region | 2 |
| e3_binding | e3 binding domain | 3 |
| eIF3_gamma | Eukaryotic initiation factor 3, gamma subunit | 1 |
| eIF5_eIF2B | Domain found in IF2B/IF5 | 2 |
| eRF1_1 | eRF1 domain 1 | 1 |
| eRF1_2 | eRF1 domain 2 | 1 |
| eRF1_3 | eRF1 domain 3 | 1 |
| efhand | EF hand | 13 |
| enolase | Enol-ase | 1 |
| enolase_N | Enolase, N-terminal domain | 1 |
| flavodoxin | Flavodoxins | 7 |
| formyl_transf | Formyl transferase | 1 |
| gln-synt | Glutamine synthetase | 2 |
| gln-synt_N | Glutamine synthetase, beta-Grasp domain | 1 |
| globin | Globin | 1 |
| glutaredoxin | Glutaredoxin | 2 |
| gpdh | glyceraldehyde 3-phosphate dehydrogenases | 1 |
| gpdh_C | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | 1 |
| guanylate_cyc | Adenylate and Guanylate cyclase catalytic domain | 1 |
| helicase_C | Helicases conserved C-terminal domain | 69 |
| heme_1 | Heme-binding domain in cytochrome b5 and oxidoreductases | 17 |
| hexapep | Bacterial transferase hexapeptide (four repeats) | 2 |
| hexokinase | Hexokinase | 3 |
| hexokinase2 | Hexokinase | 3 |
| histone | Core histone H2A/H2B/H3/H4 | 6 |
| homeobox | Homeobox domain | 3 |
| inositol_P | Inositol monophosphatase family | 3 |
| ion_trans | Ion transport protein | 1 |
| isoamylase_N | Isoamylase N-terminal domain | 1 |
| isodh | Isocitrate and isopropylmalate dehydrogenases | 6 |
| jmjC | jmjC domain | 6 |
| jmjN | jmjN domain | 2 |
| ketoacyl-synt | Beta-ketoacyl synthase | 17 |
| ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain | 19 |
| kinesin | Kinesin motor domain | 9 |
| ku | KU domain | 2 |
| lactamase_B | Metallo-beta-lactamase superfamily | 3 |
| ldh | lactate/malate dehydrogenase | 3 |
| ldh_2 | Malate/L-lactate dehydrogenase | 1 |
| ldh_C | lactate/malate dehydrogenase, alpha/beta C-terminal domain | 3 |
| ligase-CoA | CoA-ligases | 4 |
| lyase_1 | Lyase | 3 |
| malic | Malic enzyme | 2 |
| malic_N | Malic enzyme, NAD binding domain | 2 |
| mito_carr | Mitochondrial carrier proteins | 35 |
| myb_DNA-binding | Myb-like DNA-binding domain | 7 |
| myosin_head | Myosin head (motor domain) | 3 |
| oxidored_FMN | FMN oxidoreductase | 3 |
| oxidored_molyb | Oxidoreductase molybdopterin binding domain | 3 |
| oxidored_q6 | NADH ubiquinone oxidoreductase, 20 Kd subunit | 2 |
| p34-Arc | Arp2/3 complex, 34kD subunit p34-Arc | 1 |
| p450 | Cytochrome P450 | 94 |
| pec_lyase | Pectate lyase | 2 |
| peroxidase | Peroxidase | 6 |
| pfkB | pfkB family carbohydrate kinase | 3 |
| phosphorylase | Carbohydrate phosphorylases | 1 |
| pkinase | Eukaryotic protein kinase domain | 85 |
| pkinase_C | Protein kinase C terminal domain | 4 |
| polyprenyl_synt | Polyprenyl synthetases | 8 |
| pp-binding | Phosphopantetheine attachment site | 16 |
| prenyltrans | Prenyltransferase and squalene oxidase repeats | 4 |
| pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase | 9 |
| profilin | Profilins | 1 |
| proteasome | Proteasome A-type and B-type | 14 |
| pyr_redox | Pyridine nucleotide-disulphide oxidoreductase class-I | 11 |
| pyr_redox_dim | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | 1 |
| pyridoxal_deC | Pyridoxal-dependent decarboxylase conserved domain | 3 |
| ras | Ras family | 25 |
| response_reg | Response regulator receiver domain | 11 |
| ribonuc_L-PSP | Endoribonuclease L-PSP | 6 |
| ribonuc_red_lg | Ribonucleotide reductase, all-alpha domain | 1 |
| ribonuc_red_lgC | Ribonucleotide reductase, barrel domain | 1 |
| ribonuc_red_sm | Ribonucleotide reductase, small chain | 1 |
| ribonuclease | ribonuclease. | 1 |
| ribonuclease_T2 | Ribonuclease T2 family | 2 |
| rnaseH | RNase H | 74 |
| rrm | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 |
| rrm_2 | RNA recognition motif 2 | 1 |
| rve | retroviral pol related endonuclease | 46 |
| rvt | Reverse transcriptase (RNA-dependent DNA polymerase) | 80 |
| serine_carbpept | Serine carboxypeptidase | 6 |
| sodcu | Copper/zinc superoxide dismutase (SODC) | 1 |
| sodfe | Iron/manganese superoxide dismutases (SODM) | 2 |
| sodfe_C | Iron/manganese superoxide dismutases, C-terminal domain | 2 |
| succ_DH_flav_C | Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain | 1 |
| sugar_tr | Sugar (and other) transporter | 59 |
| synaptobrevin | Synaptobrevin | 2 |
| tRNA-synt_1 | tRNA synthetases class I (I, L, M and V) | 5 |
| tRNA-synt_1b | tRNA synthetases class I (W and Y) | 4 |
| tRNA-synt_1c | tRNA synthetases class I (E and Q) | 3 |
| tRNA-synt_1c_C | tRNA synthetases class I (E and Q), anti-codon binding domain | 2 |
| tRNA-synt_1d | tRNA synthetases class I (R) | 1 |
| tRNA-synt_1e | tRNA synthetases class I (C) | 1 |
| tRNA-synt_2 | tRNA synthetases class II (D, K and N) | 6 |
| tRNA-synt_2b | tRNA synthetase class II (G, H, P, S and T) | 7 |
| tRNA-synt_2d | tRNA synthetases class II (F) | 2 |
| tRNA_anti | tRNA synthetase anti-codon binding domain | 5 |
| tRNA_bind | Putative tRNA binding domain | 1 |
| thaumatin | Thaumatin family | 1 |
| thiolase | Thiolase | 3 |
| thiolase_C | Thiolase, C-terminal domain | 3 |
| thiored | Thioredoxin | 5 |
| thymidylat_synt | Thymidylate synthase | 1 |
| transcript_fac2 | Transcription factor TFIIB repeat | 2 |
| transket_pyr | Transketolase, pyridine binding domain | 4 |
| transketolase | Transketolase | 2 |
| transketolase_C | Transketolase, C-terminal domain | 3 |
| tubulin | Tubulin/FtsZ family | 3 |
| tubulin_C | Tubulin/FtsZ family, C-terminal domain | 3 |
| tyrosinase | Common central domain of tyrosinase | 2 |
| uDENN | uDENN domain | 1 |
| ubiquitin | Ubiquitin family | 8 |
| urease | Urease | 1 |
| urease_C | Urease alpha-subunit, catalytic domain | 1 |
| urease_gamma | Urease, gamma subunit | 1 |
| vATP-synt_AC39 | ATP synthase (C/AC39) subunit | 1 |
| vATP-synt_E | ATP synthase (E/31 kDa) subunit | 1 |
| voltage_CLC | Voltage gated chloride channels | 3 |
| xan_ur_permease | Xanthine/uracil permeases family | 2 |
| zf-AN1 | AN1-like Zinc finger | 1 |
| zf-C2H2 | Zinc finger, C2H2 type | 36 |
| zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 9 |
| zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar). | 5 |
| zf-CCHC | Zinc finger, CCHC class | 5 |
| zf-DHHC | DHHC zinc finger domain | 6 |
| zf-MIZ | MIZ zinc finger | 1 |
| zf-MYND | MYND finger | 7 |
| zf-NF-X1 | Zinc finger | 1 |
| zf-RanBP | Zn-finger in Ran binding protein and others. | 1 |
| zf-Tim10_DDP | Tim10/DDP family zinc finger | 3 |
| zf-UBP | Zn-finger in ubiquitin-hydrolases and other proteins | 1 |
| zf-UBR1 | Putative zinc finger in N-recognin | 1 |