Motifs

Find Motifs by ORFS:

Motifs discovered by enriched conservation between the 4 Saccharomyces genomes.
NumberMotifLocation# of ORFsEnriched in Categories
1YCGTnnnnmRYGAY5'796ChIP.ABF1.YPD: Bound by ABF1 in YPD (275 ORFs)
EXP.n73.c4: Fuzzy_73_0.04 rESR(many genes involved in protein synthesis (652 ORFs)
2RTTACCCGRM5'865ChIP.REB1.YPD: Bound by REB1 in YPD (146 ORFs)
GO.Pro.13: vesicle-mediated transport (164 ORFs)
3gcGATGAGmtgaraw5'269EXP.n72.c4: Fuzzy_72_0.04 Secretion (overlaps somewhat with Node 73, rESR) (173 ORFs)
EXP.n74.c4: Fuzzy_74_0.04 Node74 (897 ORFs)
EXP.n90.c4: Fuzzy_90_0.04 Node90 (128 ORFs)
GO.Pro.29: ribosome biogenesis (92 ORFs)
GO.Pro.36: rRNA processing (74 ORFs)
GO.Pro.6: transcription (371ORFs)
4TSGGCGGCTAWW5'245GO.Pro.39: meiosis (68 ORFs)
5RTCACGTGV5'337ChIP.CBF1.YPD: Bound by CBF1 in YPD (44 ORFs)
ChIP.MET31.YPD: Bound by MET31 in YPD (29 ORFs)
ChIP.MET4.YPD: Bound by MET4 in YPD (27 ORFs)
EXP.n3.c4: Fuzzy_3_0.04 Genes adjacent to Ty elements (82 ORFs)
GO.Pro.81: sulfur metabolism (9 ORFs)
GO.Pro.88: sulfate assimilation (8 ORFs)
GO.Pro.90: sulfur utilization(8 ORFs)
6WTATWTACADG3'522EXP.n14.c4: Fuzzy_14_0.04 Mitochondrial proteins (some Mt Ribosomal protein genes) (148 ORFs)
EXP.n15.c4: Fuzzy_15_0.04 Mitochondrial proteins (overlapping clustering with Node 14) (123 ORFs)
EXP.n16.c4: Fuzzy_16_0.04 Node16 (108 ORFs)
GO.Pro.37: mitochondrion organization and biogenesis (70 ORFs)
GO.Pro.8: protein biosynthesis (294 ORFs)
7GRRAAAWTTTTCACT5'221EXP.n73.c4: Fuzzy_73_0.04 rESR(many genes involved in protein synthesis (652 ORFs)
EXP.n74.c4: Fuzzy_74_0.04 Node74 (897 ORFs)
GO.Pro.29: ribosome biogenesis (92 ORFs)
GO.Pro.36: rRNA processing (74 ORFs)
GO.Pro.6: transcription (371ORFs)
8TTCCnaAttnGGAAA5'279ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.DIG1.14hr: Bound by DIG1 in YPD (38 ORFs)
ChIP.DIG1.90min: Bound by DIG1 in YPD (38 ORFs)
ChIP.FKH2.YPD: Bound by FKH2 in YPD (108 ORFs)
ChIP.MCM1.Alpha: Bound by MCM1 in YPD (88 ORFs)
ChIP.MCM1.YPD: Bound by MCM1 in YPD (88 ORFs)
ChIP.NDD1.YPD: Bound by NDD1 in YPD (97 ORFs)
ChIP.STE12.14hr: Bound by STE12 in YPD (56 ORFs)
ChIP.STE12.90min: Bound by STE12 in YPD (56 ORFs)
ChIP.STE12.Alpha: Bound by STE12 in YPD (56 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)
EXP.n86.c4: Fuzzy_86_0.04 Histones (85 ORFs)
9CGTTTCTTTTTCY5'291ChIP.PHD1.14hr: Bound by PHD1 in YPD (91 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
10TYYTCGAGA5'473
11TTTTCGCG5'321ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.DIG1.14hr: Bound by DIG1 in YPD (38 ORFs)
ChIP.MBP1.YPD: Bound by MBP1 in YPD (112 ORFs)
ChIP.STB1.YPD: Bound by STB1 in YPD (23 ORFs)
ChIP.STE12.14hr: Bound by STE12 in YPD (56 ORFs)
ChIP.STE12.90min: Bound by STE12 in YPD (56 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)
12TKACGCGTT5'296ChIP.MBP1.YPD: Bound by MBP1 in YPD (112 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)
GO.Pro.28: DNA repair (97 ORFs)
GO.Pro.31: DNA replication (80 ORFs)
13STGCGGnnnttTCTnnG5'146ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.PHD1.14hr: Bound by PHD1 in YPD (91 ORFs)
ChIP.PHD1.90min: Bound by PHD1 in YPD (91 ORFs)
ChIP.PHD1.YPD: Bound by PHD1 in YPD (91 ORFs)
ChIP.SOK2.14hr: Bound by SOK2 in YPD (16 ORFs)
14YCTATTGTT5'561
15TTTTGCCACCG5'146EXP.n10.c4: Fuzzy_10_0.04 Protein degradation (overlapping cluster with Node 9) (54 ORFs)
EXP.n11.c4: Fuzzy_11_0.04 Protein folding chaperones (86 ORFs)
EXP.n69.c4: Fuzzy_69_0.04 Node69 (145 ORFs)
GO.Pro.19: proteolysis and peptidolysis (128 ORFs)
16tTTGTTTACnTTT5'354ChIP.ACE2.Cu2: Bound by ACE2 in YPD (72 ORFs)
ChIP.FKH1.YPD: Bound by FKH1 in YPD (61 ORFs)
ChIP.FKH2.YPD: Bound by FKH2 in YPD (108 ORFs)
ChIP.MCM1.Alpha: Bound by MCM1 in YPD (88 ORFs)
ChIP.MCM1.YPD: Bound by MCM1 in YPD (88 ORFs)
ChIP.NDD1.YPD: Bound by NDD1 in YPD (97 ORFs)
EXP.n83.c4: Fuzzy_83_0.04 Cellcycle genes (maybe) (108 ORFs)
GO.Pro.26: mitosis (101 ORFs)
17RVACCCTD5'175
18WCGCGTCGCGt5'110ChIP.MBP1.YPD: Bound by MBP1 in YPD (112 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)
19GGGTnACCC5'221
20GnnATGTGTGGGTGT5'65ChIP.FHL1.YPD: Bound by FHL1 in YPD (194 ORFs)
21TTTTGTGTCRC5'236ChIP.SUM1.YPD: Bound by SUM1 in YPD (63 ORFs)
EXP.n22.c4: Fuzzy_22_0.04 Node22 (133 ORFs)
22TTTCAnCGCGC5'182
23TATTAWTATTATtMtnatta3'159
24SCGnHGGS5'161
25ACAGCCGCRY5'156
26DCGCGGGGH5'285ChIP.SOK2.14hr: Bound by SOK2 in YPD (16 ORFs)
27SKGTGGSGc5'114
28TTTTn(19)GCKCG5'224ChIP.GAL4.Raffi: Bound by GAL4 in YPD (40 ORFs)
29hRCCCYTWDt5'442
30TKCCCnnnnGGG5'256ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)
31GTGTCAGTAAt5'154ChIP.SUM1.YPD: Bound by SUM1 in YPD (63 ORFs)
32RGTTTTTCCG5'283ChIP.PHD1.14hr: Bound by PHD1 in YPD (91 ORFs)
ChIP.RGT1.Low G: Bound by RGT1 in YPD (2 ORFs)
33TTCTMGAAGA5'253ChIP.HSF1.YPD: Bound by HSF1 in YPD (55 ORFs)
ChIP.MSN2.Acid: Bound by MSN2 in YPD (1 ORFs)
EXP.n12.c4: Fuzzy_12_0.04 Protein folding chaperones (overlapping group with Node 11) (18 ORFs)
EXP.n13.c4: Fuzzy_13_0.04 Node13 (50 ORFs)
GO.Pro.48: protein folding (43 ORFs)
34YCCGSGGS5'92ChIP.SOK2.14hr: Bound by SOK2 in YPD (16 ORFs)
35CnCCTTTTATAC5'124
36CCSGTAnCGG5'110ChIP.LEU3.YPD: Bound by LEU3 in YPD (22 ORFs)
37SKTKCCTT5'175ChIP.PHD1.YPD: Bound by PHD1 in YPD (91 ORFs)
38CTCCCCTTAT5'218EXP.n8.c4: Fuzzy_8_0.04 iESR (638 ORFs)
39GCCCGG5'152tRNA.UP: Upstream of a tRNA (282 ORFs)
40SGCGCGRB5'113
41CTCSGCS5'77
42TGnKAGCGCCG5'72
43ATGACTCWT5'281ChIP.GCN4.3AT: Bound by GCN4 in YPD (80 ORFs)
ChIP.GCN4.YPD: Bound by GCN4 in YPD (80 ORFs)
ChIP.RTG3.Rapam: Bound by RTG3 in YPD (16 ORFs)
EXP.n3.c4: Fuzzy_3_0.04 Genes adjacent to Ty elements (82 ORFs)
EXP.n81.c4: Fuzzy_81_0.04 Lysine biosynthesis (37 ORFs)
EXP.n82.c4: Fuzzy_82_0.04 G2/Mgenes (52 ORFs)
GO.Pro.120: Not yet annotated (607 ORFs)
GO.Pro.27: amino acid metabolism (98 ORFs)
GO.Pro.43: amino acid biosynthesis (61 ORFs)
44CCGAnnnTCGG5'76EXP.n46.c4: Fuzzy_46_0.04 Major facilitator genes (192 ORFs)
45SCGMnnnnnnKCG5'59
46CnCCGCGCnnTTTs5'184
47TTTTnnnnnnnnnnnngGGGT5'359
48TGTRnCAW3'155
49YCSknnnnnnnnnKCGG5'90
50CGGnnnnnnnnnnnnnKCGV5'52
51WGTGACg5'202ChIP.SUM1.YPD: Bound by SUM1 in YPD (63 ORFs)
52RTCCCTV5'96
53YTCGTTTAGG5'141EXP.n89.c4: Fuzzy_89_0.04 Node89 (90 ORFs)
GO.Pro.21: lipid metabolism (116 ORFs)
54TYCGKRM5'309
55CGCnnnnnnnnnnnnnnBCGB5'76
56TWCCCCM5'95
57CGGCnnMGnnnnnnnCGC5'84tRNA.UP: Upstream of a tRNA (282 ORFs)
58CCGSnnnnnGVC5'69
59tRTAMATAKWT3'634
60TtTATAnTATATAnA3'239
61GKBAGGGT5'363
62GCnnTTAnCGG5'209
63GGCSnnnnnGnnnCGCG5'80tRNA.UP: Upstream of a tRNA (282 ORFs)
64TTCTCnnnnnnnCGC5'292ChIP.PHD1.90min: Bound by PHD1 in YPD (91 ORFs)
ChIP.PHD1.YPD: Bound by PHD1 in YPD (91 ORFs)
65SCGKnnnnKCGD5'73
66AATATTCTT3'437
67CGCGTnnnnnnnnACG5'151ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)
68CCGHVGGM5'57
69CGCG=TTTT5'212
70CGCGnnnnnGGGS5'156
71cTGCAGGGR5'264ChIP.SKN7.YPD: Bound by SKN7 in YPD (105 ORFs)



CategoryMotifs
ChIP.ABF1.YPD: Bound by ABF1 in YPD (275 ORFs)1
ChIP.ACE2.Cu2: Bound by ACE2 in YPD (72 ORFs)16
ChIP.ASH1.14hr: Bound by ASH1 in YPD (2 ORFs)8 11 13 30
ChIP.CBF1.YPD: Bound by CBF1 in YPD (44 ORFs)5
ChIP.DIG1.14hr: Bound by DIG1 in YPD (38 ORFs)8 11
ChIP.DIG1.90min: Bound by DIG1 in YPD (38 ORFs)8
ChIP.FHL1.YPD: Bound by FHL1 in YPD (194 ORFs)20
ChIP.FKH1.YPD: Bound by FKH1 in YPD (61 ORFs)16
ChIP.FKH2.YPD: Bound by FKH2 in YPD (108 ORFs)8 16
ChIP.GAL4.Raffi: Bound by GAL4 in YPD (40 ORFs)28
ChIP.GCN4.3AT: Bound by GCN4 in YPD (80 ORFs)43
ChIP.GCN4.YPD: Bound by GCN4 in YPD (80 ORFs)43
ChIP.HSF1.YPD: Bound by HSF1 in YPD (55 ORFs)33
ChIP.LEU3.YPD: Bound by LEU3 in YPD (22 ORFs)36
ChIP.MBP1.YPD: Bound by MBP1 in YPD (112 ORFs)11 12 18
ChIP.MCM1.Alpha: Bound by MCM1 in YPD (88 ORFs)8 16
ChIP.MCM1.YPD: Bound by MCM1 in YPD (88 ORFs)8 16
ChIP.MET31.YPD: Bound by MET31 in YPD (29 ORFs)5
ChIP.MET4.YPD: Bound by MET4 in YPD (27 ORFs)5
ChIP.MSN2.Acid: Bound by MSN2 in YPD (1 ORFs)33
ChIP.NDD1.YPD: Bound by NDD1 in YPD (97 ORFs)8 16
ChIP.PHD1.14hr: Bound by PHD1 in YPD (91 ORFs)9 13 32
ChIP.PHD1.90min: Bound by PHD1 in YPD (91 ORFs)13 64
ChIP.PHD1.YPD: Bound by PHD1 in YPD (91 ORFs)13 37 64
ChIP.REB1.YPD: Bound by REB1 in YPD (146 ORFs)2
ChIP.RGT1.Low G: Bound by RGT1 in YPD (2 ORFs)32
ChIP.RTG3.Rapam: Bound by RTG3 in YPD (16 ORFs)43
ChIP.SKN7.YPD: Bound by SKN7 in YPD (105 ORFs)71
ChIP.SOK2.14hr: Bound by SOK2 in YPD (16 ORFs)13 26 34
ChIP.STB1.YPD: Bound by STB1 in YPD (23 ORFs)11
ChIP.STE12.14hr: Bound by STE12 in YPD (56 ORFs)8 11
ChIP.STE12.90min: Bound by STE12 in YPD (56 ORFs)8 11
ChIP.STE12.Alpha: Bound by STE12 in YPD (56 ORFs)8
ChIP.SUM1.YPD: Bound by SUM1 in YPD (63 ORFs)21 31 51
ChIP.SWI4.YPD: Bound by SWI4 in YPD (136 ORFs)8 9 11 12 18 30
ChIP.SWI6.YPD: Bound by SWI6 in YPD (96 ORFs)8 11 12 18 67
EXP.n10.c4: Fuzzy_10_0.04 Protein degradation (overlapping cluster with Node 9) (54 ORFs)15
EXP.n11.c4: Fuzzy_11_0.04 Protein folding chaperones (86 ORFs)15
EXP.n12.c4: Fuzzy_12_0.04 Protein folding chaperones (overlapping group with Node 11) (18 ORFs)33
EXP.n13.c4: Fuzzy_13_0.04 Node13 (50 ORFs)33
EXP.n14.c4: Fuzzy_14_0.04 Mitochondrial proteins (some Mt Ribosomal protein genes) (148 ORFs)6
EXP.n15.c4: Fuzzy_15_0.04 Mitochondrial proteins (overlapping clustering with Node 14) (123 ORFs)6
EXP.n16.c4: Fuzzy_16_0.04 Node16 (108 ORFs)6
EXP.n22.c4: Fuzzy_22_0.04 Node22 (133 ORFs)21
EXP.n3.c4: Fuzzy_3_0.04 Genes adjacent to Ty elements (82 ORFs)5 43
EXP.n46.c4: Fuzzy_46_0.04 Major facilitator genes (192 ORFs)44
EXP.n69.c4: Fuzzy_69_0.04 Node69 (145 ORFs)15
EXP.n72.c4: Fuzzy_72_0.04 Secretion (overlaps somewhat with Node 73, rESR) (173 ORFs)3
EXP.n73.c4: Fuzzy_73_0.04 rESR(many genes involved in protein synthesis (652 ORFs)1 7
EXP.n74.c4: Fuzzy_74_0.04 Node74 (897 ORFs)3 7
EXP.n8.c4: Fuzzy_8_0.04 iESR (638 ORFs)38
EXP.n81.c4: Fuzzy_81_0.04 Lysine biosynthesis (37 ORFs)43
EXP.n82.c4: Fuzzy_82_0.04 G2/Mgenes (52 ORFs)43
EXP.n83.c4: Fuzzy_83_0.04 Cellcycle genes (maybe) (108 ORFs)16
EXP.n86.c4: Fuzzy_86_0.04 Histones (85 ORFs)8
EXP.n89.c4: Fuzzy_89_0.04 Node89 (90 ORFs)53
EXP.n90.c4: Fuzzy_90_0.04 Node90 (128 ORFs)3
GO.Pro.120: Not yet annotated (607 ORFs)43
GO.Pro.13: vesicle-mediated transport (164 ORFs)2
GO.Pro.19: proteolysis and peptidolysis (128 ORFs)15
GO.Pro.21: lipid metabolism (116 ORFs)53
GO.Pro.26: mitosis (101 ORFs)16
GO.Pro.27: amino acid metabolism (98 ORFs)43
GO.Pro.28: DNA repair (97 ORFs)12
GO.Pro.29: ribosome biogenesis (92 ORFs)3 7
GO.Pro.31: DNA replication (80 ORFs)12
GO.Pro.36: rRNA processing (74 ORFs)3 7
GO.Pro.37: mitochondrion organization and biogenesis (70 ORFs)6
GO.Pro.39: meiosis (68 ORFs)4
GO.Pro.43: amino acid biosynthesis (61 ORFs)43
GO.Pro.48: protein folding (43 ORFs)33
GO.Pro.6: transcription (371ORFs)3 7
GO.Pro.81: sulfur metabolism (9 ORFs)5
GO.Pro.88: sulfate assimilation (8 ORFs)5
GO.Pro.8: protein biosynthesis (294 ORFs)6
GO.Pro.90: sulfur utilization(8 ORFs)5
tRNA.UP: Upstream of a tRNA (282 ORFs)39 57 63