BLAST-HumanInts_tbn 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|13638154|sp|P16144|ITB4_HUMAN Integrin beta-4 precursor (GP150) (CD104 antigen) (1822 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 25 4.7 >super_15687 Length = 322648 Score = 25.4 bits (54), Expect = 4.7 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 6/35 (17%) Frame = +2 Query: 554 RGRCSMGQCV------CEPGWTGPSCDCPLSNATC 582 +GRC G C G T S CP S ATC Sbjct: 98144 KGRCLRGSVTITTSISCGCGVTSISAACPSSTATC 98248 Score = 25.0 bits (53), Expect = 6.1 Identities = 17/55 (30%), Positives = 23/55 (40%), Gaps = 2/55 (3%) Frame = +2 Query: 1584 SVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVH--PQSPLCPLPGSAF 1636 S + + LPNH R+R+ S VH P +P CP PG+ F Sbjct: 160787 SCCIPNYLPNHKP------------RRQRKTAAIPPSFVHRVPTTPRCPFPGAQF 160915 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.317 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 618,883 Number of Sequences: 1 Number of extensions: 9556 Number of successful extensions: 28 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 11 length of query: 1822 length of database: 107,549 effective HSP length: 83 effective length of query: 1739 effective length of database: 107,466 effective search space: 186883374 effective search space used: 186883374 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124968|sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet membrane glycoprotein IIIa) (GPIIIa) (CD61 antigen) (788 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 32 0.020 >super_15687 Length = 322648 Score = 32.0 bits (71), Expect = 0.020 Identities = 34/123 (27%), Positives = 47/123 (37%), Gaps = 19/123 (15%) Frame = -3 Query: 442 IKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSE 501 + +GF V F D + P H C N G+F C +CR G LG+ CS Sbjct: 175016 LNAIGFMCCYFNPVIFPPDLNECSTNSPCQHDCQNTVGSFIC-ICRPGYYLLGNGYNCSG 174840 Query: 502 E------DYRP------SQQDECSPREGQPVCSQ-------RGECLCGQCVCHSSDFGKI 542 + +P S +EC+ EG C Q CLC Q S++ Sbjct: 174839 NYLLSMLEKKPTKYTNISDVNECN--EGLHSCDQICVNEIGYHRCLCNQGYSLSANNATC 174666 Query: 543 TGK 545 +GK Sbjct: 174665 SGK 174657 Score = 28.9 bits (63), Expect = 0.17 Identities = 15/39 (38%), Positives = 18/39 (45%), Gaps = 2/39 (5%) Frame = -1 Query: 499 CSEEDYRPSQ--QDECSPREGQPVCSQRGECLCGQCVCH 535 C E Y + DEC+P +GQ C E L G CH Sbjct: 176434 CCTEMYMNNMFISDECAPNDGQGPCDHFCENLDGSFQCH 176318 Score = 26.2 bits (56), Expect = 1.1 Identities = 39/175 (22%), Positives = 57/175 (32%), Gaps = 30/175 (17%) Frame = -3 Query: 460 DCACQAQAEPNSHRCNNGNGTFECGVCRCG------PGWLGSQCECSEEDYR-------- 505 +CA A S C N G++ CG C G G +G C + Y Sbjct: 175166 ECAASAADHGCSQLCVNNPGSYTCG-CHAGYTKVGDKGCIGKHCV*A*SAYLNAIGFMCC 174990 Query: 506 -------PSQQDECSPREGQPVCSQRGECLCGQ--CVCHSSDFGKITGKYCECDDFSCVR 556 P +ECS C + G C+C + G C + + Sbjct: 174989 YFNPVIFPPDLNECSTNS---PCQHDCQNTVGSFICICRPGYYLLGNGYNCSGNYLLSML 174819 Query: 557 YKGEM----CSGHGQCSCGDCLCDS---DWTGYYCNCTTRTDTCMSSNGLLCSGR 604 K S +C+ G CD + GY+ C +S+N CSG+ Sbjct: 174818 EKKPTKYTNISDVNECNEGLHSCDQICVNEIGYH-RCLCNQGYSLSANNATCSGK 174657 Score = 25.0 bits (53), Expect = 2.5 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 215 GYKHVLTLTDQVTRFNEEVKKQSVS 239 G++ VLTL D TR+ E V ++++ Sbjct: 250792 GHRFVLTLVDYATRYPEAVPLKTIT 250866 Score = 24.3 bits (51), Expect = 4.3 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -1 Query: 460 DCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCEC 499 +CA P H C N +G+F+C C G S EC Sbjct: 176392 ECAPNDGQGPCDHFCENLDGSFQCH-CIGGYNLQESGLEC 176276 Score = 24.3 bits (51), Expect = 4.3 Identities = 12/37 (32%), Positives = 15/37 (40%) Frame = -3 Query: 575 CDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGS 611 C+SD C+C D C + GK CGS Sbjct: 219002 CNSDQPNSVCSCCCSDDGCNRGDLDCVVAPGKRYCGS 218892 Score = 24.3 bits (51), Expect = 4.3 Identities = 8/12 (66%), Positives = 9/12 (74%) Frame = -1 Query: 528 LCGQCVCHSSDF 539 LCG+CVC DF Sbjct: 28432 LCGRCVCVQKDF 28397 Score = 23.5 bits (49), Expect = 7.3 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = -3 Query: 496 QCECSEEDYRPSQQDECSPREGQPVCSQR 524 + +CS Y+P ++ + SPR P +R Sbjct: 94688 RADCSYHSYKPCKKVQNSPRPKSPTRRRR 94602 Score = 23.5 bits (49), Expect = 7.3 Identities = 8/15 (53%), Positives = 9/15 (59%) Frame = +2 Query: 525 GECLCGQCVCHSSDF 539 G CLCG VC S + Sbjct: 313223 GRCLCGDMVCRLSRY 313267 Score = 23.1 bits (48), Expect = 9.5 Identities = 9/21 (42%), Positives = 11/21 (51%) Frame = -1 Query: 525 GECLCGQCVCHSSDFGKITGK 545 G C CGQ +C+S GK Sbjct: 184789 G*CKCGQIICNS*HLSTFGGK 184727 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.135 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340,480 Number of Sequences: 1 Number of extensions: 6659 Number of successful extensions: 42 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 42 length of query: 788 length of database: 107,549 effective HSP length: 76 effective length of query: 712 effective length of database: 107,473 effective search space: 76520776 effective search space used: 76520776 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124966|sp|P05107|ITB2_HUMAN Integrin beta-2 precursor (Cell surface adhesion glycoproteins LFA-1/CR3/p150,95 beta-subunit) (CD18) (Complement receptor C3 beta-subunit) (769 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 28 0.37 >super_15687 Length = 322648 Score = 27.7 bits (60), Expect = 0.37 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +1 Query: 472 CD-TGYIGKNCECQTQGRSSQELEGSCRKDNNS 503 CD TG++ K+C+C++ RS + GS + NS Sbjct: 249751 CDRTGHLAKDCKCRSSIRSPAKQVGSAGETLNS 249849 Score = 25.4 bits (54), Expect = 1.9 Identities = 10/21 (47%), Positives = 12/21 (56%) Frame = -2 Query: 509 LGDCVCGQCLCHTSDVPGKLI 529 LG CV GQC T +P + I Sbjct: 192117 LGSCVHGQCTLWTLSIPSRYI 192055 Score = 25.0 bits (53), Expect = 2.4 Identities = 14/44 (31%), Positives = 20/44 (44%), Gaps = 1/44 (2%) Frame = +3 Query: 499 KDNNSIICSGLGDCVCGQC-LCHTSDVPGKLIYGQYCECDTINC 541 K N + +C GL D VC L + SD L +G + + C Sbjct: 278562 KANIATVCRGLYDIVCSSLQL*NVSDRKDVLTFGFFVSTGPVTC 278693 Score = 23.5 bits (49), Expect = 7.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 504 IICSGLGDCVCGQCLCHTSDVP 525 IIC+ L + C +C CH +D P Sbjct: 4737 IICAVL-NFHCTKCTCHMADAP 4799 Score = 23.5 bits (49), Expect = 7.1 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 76 DDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLR 108 DD D + E E+ NGG +Q+ + V LYLR Sbjct: 176839 DDNTDCIDINECDEN-NGGCEQV*DRTVVLYLR 176744 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.321 0.138 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 336,179 Number of Sequences: 1 Number of extensions: 6610 Number of successful extensions: 23 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 19 length of query: 769 length of database: 107,549 effective HSP length: 76 effective length of query: 693 effective length of database: 107,473 effective search space: 74478789 effective search space used: 74478789 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|23831237|sp|P08648|ITA5_HUMAN Integrin alpha-5 precursor (Fibronectin receptor alpha subunit) (Integrin alpha-F) (VLA-5) (CD49e) (1049 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 47 1e-06 >super_15687 Length = 322648 Score = 46.6 bits (109), Expect = 1e-06 Identities = 28/86 (32%), Positives = 43/86 (49%), Gaps = 2/86 (2%) Frame = -3 Query: 458 SALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIFPAMFNPEERSCSLEG 517 + + G D+D N YPD+IVGS D V R RPI+ A + + P + + + Sbjct: 111605 NGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQPRLID----VITCVT 111438 Query: 518 NPVACINLSFCLNAS--GKHVADSIG 541 AC ++ CLNA+ +H +IG Sbjct: 111437 GSAACSSVRICLNATFRKEHPPTNIG 111360 Score = 46.2 bits (108), Expect = 1e-06 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 10/90 (11%) Frame = -3 Query: 458 SALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIFPAMFNPEERSCSLEG 517 + + G D+D N YPD+IVGS D V R RPI+ A + + P + + Sbjct: 123755 NGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQPRFID----VITCVT 123588 Query: 518 NPVACINLSFCLNAS----------GKHVA 537 AC ++ CLNA+ GKH++ Sbjct: 123587 GSAACSSVRICLNATFRKEHPPTNIGKHIS 123498 Score = 41.2 bits (95), Expect = 5e-05 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = -1 Query: 391 RFGSSLTPLGDLDQDGYNDVAIGAPFGGET 420 RFG S+ GDLDQ+GY+DV IGAP+ T Sbjct: 111868 RFGMSVASAGDLDQNGYDDVIIGAPYEEST 111779 Score = 41.2 bits (95), Expect = 5e-05 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = -1 Query: 391 RFGSSLTPLGDLDQDGYNDVAIGAPFGGET 420 RFG S+ GDLDQ+GY+DV IGAP+ T Sbjct: 124018 RFGMSVASAGDLDQNGYDDVIIGAPYEEST 123929 Score = 29.3 bits (64), Expect = 0.18 Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 10/40 (25%) Frame = -1 Query: 449 ASHTPDFF-GSALRGGR---------DLDGNGYPDLIVGS 478 A+H P GS+L G R DLD NGY D+I+G+ Sbjct: 111916 ANHQPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGA 111797 Score = 29.3 bits (64), Expect = 0.18 Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 10/40 (25%) Frame = -1 Query: 449 ASHTPDFF-GSALRGGR---------DLDGNGYPDLIVGS 478 A+H P GS+L G R DLD NGY D+I+G+ Sbjct: 124066 ANHQPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGA 123947 Score = 28.5 bits (62), Expect = 0.31 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -3 Query: 273 GYSVAVGEFSGDDTEDFVAGVPK 295 GYSV G F G TE +GVPK Sbjct: 112748 GYSVTSGNFYGGATEYIASGVPK 112680 Score = 28.5 bits (62), Expect = 0.31 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -1 Query: 273 GYSVAVGEFSGDDTEDFVAGVPK 295 GYSV G F G TE +GVPK Sbjct: 124894 GYSVTSGNFYGGATEYIASGVPK 124826 Score = 25.4 bits (54), Expect = 2.6 Identities = 10/15 (66%), Positives = 11/15 (72%) Frame = -1 Query: 439 PSQVLQPLWAASHTP 453 PSQV PLWA + TP Sbjct: 254767 PSQVSNPLWAVTLTP 254723 Score = 23.5 bits (49), Expect = 9.9 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -3 Query: 321 QMASYFGYAVAATDVN 336 Q +YFG+ V A D+N Sbjct: 124676 QQGAYFGHTVVAMDIN 124629 Score = 23.5 bits (49), Expect = 9.9 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 321 QMASYFGYAVAATDVN 336 Q +YFG+ V A D+N Sbjct: 112530 QQGAYFGHTVVAMDIN 112483 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.317 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 336,975 Number of Sequences: 1 Number of extensions: 4627 Number of successful extensions: 24 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 24 length of query: 1049 length of database: 107,549 effective HSP length: 79 effective length of query: 970 effective length of database: 107,470 effective search space: 104245900 effective search space used: 104245900 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|11467963|sp|P26006|ITA3_HUMAN Integrin alpha-3 precursor (Galactoprotein B3) (GAPB3) (VLA-3 alpha chain) (CD49c) (1066 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 55 5e-19 >super_15687 Length = 322648 Score = 55.5 bits (132), Expect(2) = 5e-19 Identities = 25/57 (43%), Positives = 39/57 (67%), Gaps = 5/57 (8%) Frame = -1 Query: 365 SGSAFGLSVASIGDINQDGFQDIAVGAPFE-----GLGKVYIYHSSSKGLLRQPQQV 416 SG+ FG+SVAS GD++Q+G+ D+ +GAP+E G +Y+Y++S GL +QV Sbjct: 111877 SGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQV 111707 Score = 55.5 bits (132), Expect(2) = 8e-19 Identities = 25/57 (43%), Positives = 39/57 (67%), Gaps = 5/57 (8%) Frame = -1 Query: 365 SGSAFGLSVASIGDINQDGFQDIAVGAPFE-----GLGKVYIYHSSSKGLLRQPQQV 416 SG+ FG+SVAS GD++Q+G+ D+ +GAP+E G +Y+Y++S GL +QV Sbjct: 124027 SGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQV 123857 Score = 52.4 bits (124), Expect(2) = 5e-19 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 7/74 (9%) Frame = -3 Query: 430 FGYSL----SGQMDVDENFYPDLLVGS-LSDHIVLLRARPVINIVHKTLVPRPAVLDPAL 484 FGYSL +G +DVD N YPD++VGS SD + +LR+RP+I++ + + +P ++D Sbjct: 111623 FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVEL-QPRLIDVIT 111447 Query: 485 CT--ATSCVQVELC 496 C + +C V +C Sbjct: 111446 CVTGSAACSSVRIC 111405 Score = 51.6 bits (122), Expect(2) = 8e-19 Identities = 29/74 (39%), Positives = 46/74 (61%), Gaps = 7/74 (9%) Frame = -3 Query: 430 FGYSL----SGQMDVDENFYPDLLVGS-LSDHIVLLRARPVINIVHKTLVPRPAVLDPAL 484 FGYSL +G +DVD N YPD++VGS SD + +LR+RP+I++ + + +P +D Sbjct: 123773 FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVEL-QPRFIDVIT 123597 Query: 485 CT--ATSCVQVELC 496 C + +C V +C Sbjct: 123596 CVTGSAACSSVRIC 123555 Score = 46.6 bits (109), Expect = 1e-06 Identities = 23/61 (37%), Positives = 32/61 (51%) Frame = -3 Query: 302 QVGAYFGSAIALADLNNDGWQDLLVGAPYYFERKEEVGGAIYVFMNQAGTSFPAHPSLLL 361 Q GAYFG + D+N D + DLLV AP Y + G +++FMN + P H + Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMN--NQTHPGHQMWVS 124503 Query: 362 H 362 H Sbjct: 124502 H 124500 Score = 46.6 bits (109), Expect = 1e-06 Identities = 23/61 (37%), Positives = 32/61 (51%) Frame = -2 Query: 302 QVGAYFGSAIALADLNNDGWQDLLVGAPYYFERKEEVGGAIYVFMNQAGTSFPAHPSLLL 361 Q GAYFG + D+N D + DLLV AP Y + G +++FMN + P H + Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMN--NQTHPGHQMWVS 112357 Query: 362 H 362 H Sbjct: 112356 H 112354 Score = 46.2 bits (108), Expect = 1e-06 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 2/57 (3%) Frame = -1 Query: 296 QVLEGSQV-GAYFGSAIALA-DLNNDGWQDLLVGAPYYFERKEEVGGAIYVFMNQAG 350 QVL GS + GA FG ++A A DL+ +G+ D+++GAPY E GAIYV+ N G Sbjct: 111901 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYE-ESTSTSSGAIYVYYNSHG 111734 Score = 46.2 bits (108), Expect = 1e-06 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 2/57 (3%) Frame = -1 Query: 296 QVLEGSQV-GAYFGSAIALA-DLNNDGWQDLLVGAPYYFERKEEVGGAIYVFMNQAG 350 QVL GS + GA FG ++A A DL+ +G+ D+++GAPY E GAIYV+ N G Sbjct: 124051 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYE-ESTSTSSGAIYVYYNSHG 123884 Score = 25.8 bits (55), Expect = 2.0 Identities = 11/29 (37%), Positives = 14/29 (47%) Frame = +3 Query: 902 LTCATGRAHCVWLECPIPDAPVVTNVTVK 930 + CA HC C + DAPV V +K Sbjct: 4737 IICAVLNFHCTKCTCHMADAPVFPRVRLK 4823 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.320 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,106 Number of Sequences: 1 Number of extensions: 5020 Number of successful extensions: 20 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 20 length of query: 1066 length of database: 107,549 effective HSP length: 79 effective length of query: 987 effective length of database: 107,470 effective search space: 106072890 effective search space used: 106072890 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|2829468|sp|P56199|ITA1_HUMAN Integrin alpha-1 (Laminin and collagen receptor) (VLA-1) (CD49a) (1151 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 51 6e-08 >super_15687 Length = 322648 Score = 50.8 bits (120), Expect = 6e-08 Identities = 30/80 (37%), Positives = 42/80 (52%) Frame = -3 Query: 457 QIGSYFGSILTTTDIDKDSNTDILLVGAPMYMGTEKEEQGKVYVYALNQTRFEYQMSLEP 516 Q G+YFG + DI+KDS D LLV AP+Y +QGKV+++ NQT +QM + Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLFMNNQTHPGHQMWVSH 124500 Query: 517 IKQTCCSSRQHNSCTTENKN 536 + H + E KN Sbjct: 124499 PSTLGYTLHLHTNVCPEGKN 124440 Score = 50.1 bits (118), Expect = 1e-07 Identities = 31/89 (34%), Positives = 44/89 (48%) Frame = -2 Query: 457 QIGSYFGSILTTTDIDKDSNTDILLVGAPMYMGTEKEEQGKVYVYALNQTRFEYQMSLEP 516 Q G+YFG + DI+KDS D LLV AP+Y +QGKV+++ NQT +QM + Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLFMNNQTHPGHQMWVSH 112354 Query: 517 IKQTCCSSRQHNSCTTENKNEPCGARFGT 545 + H + E K R+ T Sbjct: 112353 PSTLGYTLHLHTNVYPEGKKRRIKERYHT 112267 Score = 48.1 bits (113), Expect = 4e-07 Identities = 20/45 (44%), Positives = 33/45 (72%), Gaps = 3/45 (6%) Frame = -1 Query: 540 GARFGTAIAAVKDLNLDGFNDIVIGAPLEDD---HGGAVYIYHGS 581 GARFG ++A+ DL+ +G++D++IGAP E+ GA+Y+Y+ S Sbjct: 111874 GARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNS 111740 Score = 48.1 bits (113), Expect = 4e-07 Identities = 20/45 (44%), Positives = 33/45 (72%), Gaps = 3/45 (6%) Frame = -1 Query: 540 GARFGTAIAAVKDLNLDGFNDIVIGAPLEDD---HGGAVYIYHGS 581 GARFG ++A+ DL+ +G++D++IGAP E+ GA+Y+Y+ S Sbjct: 124024 GARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNS 123890 Score = 32.0 bits (71), Expect = 0.031 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = -3 Query: 540 GARFGTAIAAVKDLNLDGFNDIVIGAPLEDDHGG 573 GA FG + A+ D+N D ++D+++ APL +D G Sbjct: 124670 GAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNG 124572 Score = 32.0 bits (71), Expect = 0.031 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = -2 Query: 540 GARFGTAIAAVKDLNLDGFNDIVIGAPLEDDHGG 573 GA FG + A+ D+N D ++D+++ APL +D G Sbjct: 112524 GAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNG 112426 Score = 26.9 bits (58), Expect = 0.99 Identities = 27/109 (24%), Positives = 47/109 (42%), Gaps = 7/109 (6%) Frame = +3 Query: 821 KDSAYNTRTIVHYSPNLVF--SGIEAIQKDSCESNHNITCKVGYPFLRRGEMVTFKI--- 875 +D N + I+ YS L+ I K S +S++ + Y + + Sbjct: 241206 RDLTINIKEIILYSELLLS*ADQIRITTKQSTKSDNTDNSVITYALTVTNSTIQLRYQST 241385 Query: 876 --LFQFNTSYLMENVTIYLSATSDSEEPPETLSDNVVNISIPVKYEVGL 922 +F F + +EN+ I+ + S SEEP +S ++ I+I V GL Sbjct: 241386 SGVFLFPIANALENMDIFSTTRSVSEEPSYHIS-YILAIAISVLVIFGL 241529 Score = 26.2 bits (56), Expect = 1.7 Identities = 10/36 (27%), Positives = 20/36 (54%) Frame = -1 Query: 792 LHVATTEKDLLIVRSQNDKFNVSLTVKNTKDSAYNT 827 +H+ T K++ + K N+ ++NTK S ++T Sbjct: 155485 IHIKHTRKNITLQLKSKLKTNLHSNIRNTKSSLFST 155378 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 401,934 Number of Sequences: 1 Number of extensions: 6189 Number of successful extensions: 37 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 35 length of query: 1151 length of database: 107,549 effective HSP length: 79 effective length of query: 1072 effective length of database: 107,470 effective search space: 115207840 effective search space used: 115207840 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124942|sp|P17301|ITA2_HUMAN Integrin alpha-2 precursor (Platelet membrane glycoprotein Ia) (GPIa) (Collagen receptor) (VLA-2 alpha chain) (CD49b) (1181 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 50 1e-07 >super_15687 Length = 322648 Score = 49.7 bits (117), Expect = 1e-07 Identities = 26/79 (32%), Positives = 43/79 (53%), Gaps = 3/79 (3%) Frame = -1 Query: 539 QHQFLEGPEGIENTRFGSAIAALSDINMDGFNDVIVGSPLE---NQNSGAVYIYNGHQGT 595 Q Q L G + RFG ++A+ D++ +G++DVI+G+P E + +SGA+Y+Y G Sbjct: 111907 QPQVLSG-SSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGG 111731 Query: 596 IRTKYSQKILGSDGAFRSH 614 + Q L A +H Sbjct: 111730 LTETNRQVSLSPSNAHVTH 111674 Score = 49.3 bits (116), Expect = 2e-07 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 4/64 (6%) Frame = -1 Query: 539 QHQFLEGPEGIENTRFGSAIAALSDINMDGFNDVIVGSPLE---NQNSGAVYI-YNGHQG 594 Q Q L G + RFG ++A+ D++ +G++DVI+G+P E + +SGA+Y+ YN H G Sbjct: 124057 QPQVLSG-SSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGG 123881 Query: 595 TIRT 598 T Sbjct: 123880 LTET 123869 Score = 41.2 bits (95), Expect = 5e-05 Identities = 22/67 (32%), Positives = 38/67 (55%) Frame = -2 Query: 486 QIGSYFGSVLCSVDVDKDTITDVLLVGAPMYMSDLKKEEGRVYLFTIKKGILGQHQFLEG 545 Q G+YFG + ++D++KD+ D LLV AP+Y ++G+V+LF + G ++ Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLFMNNQTHPGHQMWVSH 112354 Query: 546 PEGIENT 552 P + T Sbjct: 112353 PSTLGYT 112333 Score = 41.2 bits (95), Expect = 5e-05 Identities = 22/67 (32%), Positives = 38/67 (55%) Frame = -3 Query: 486 QIGSYFGSVLCSVDVDKDTITDVLLVGAPMYMSDLKKEEGRVYLFTIKKGILGQHQFLEG 545 Q G+YFG + ++D++KD+ D LLV AP+Y ++G+V+LF + G ++ Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLFMNNQTHPGHQMWVSH 124500 Query: 546 PEGIENT 552 P + T Sbjct: 124499 PSTLGYT 124479 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.317 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 386,464 Number of Sequences: 1 Number of extensions: 5514 Number of successful extensions: 18 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 17 length of query: 1181 length of database: 107,549 effective HSP length: 80 effective length of query: 1101 effective length of database: 107,469 effective search space: 118323369 effective search space used: 118323369 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124975|sp|P26012|ITB8_HUMAN Integrin beta-8 precursor (769 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 24 5.4 >super_15687 Length = 322648 Score = 23.9 bits (50), Expect = 5.4 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = +2 Query: 446 NYAIIKPIGFNETAKIHIHRNC----SCQCEDNRG 476 NY I FN+T K+ I+ C C+C G Sbjct: 241328 NYLCIDGYQFNDTIKVSINFRCFFISHCKCFGKHG 241432 Score = 23.5 bits (49), Expect = 7.1 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%) Frame = +1 Query: 446 NYAIIKPIGFNETAKIHIHRNC----SCQCEDNRG 476 NY I FN+T K+ ++ C C+C G Sbjct: 215611 NYLCIDGYQFNDTIKVSVNFRCFFISHCKCFGKHG 215715 Score = 23.5 bits (49), Expect = 7.1 Identities = 8/21 (38%), Positives = 11/21 (52%) Frame = -1 Query: 662 ALMEQQHYVDQTSECFSSPSY 682 AL +HY D C ++P Y Sbjct: 109570 ALSTSKHYTDANVNCLNAPRY 109508 Score = 23.1 bits (48), Expect = 9.2 Identities = 11/38 (28%), Positives = 18/38 (46%), Gaps = 3/38 (7%) Frame = +1 Query: 453 IGFNETAKIHI---HRNCSCQCEDNRGPKGKCVDETFL 487 + F+ T K +I + NC D GP+ C+ F+ Sbjct: 69394 VQFSPTNKYNIFDRYTNCQTITLDQNGPRTHCITSFFI 69507 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.321 0.136 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 353,025 Number of Sequences: 1 Number of extensions: 7043 Number of successful extensions: 33 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 33 length of query: 769 length of database: 107,549 effective HSP length: 76 effective length of query: 693 effective length of database: 107,473 effective search space: 74478789 effective search space used: 74478789 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124973|sp|P26010|ITB7_HUMAN Integrin beta-7 precursor (798 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 25 2.5 >super_15687 Length = 322648 Score = 25.0 bits (53), Expect = 2.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 677 LALAPILDDGWCKERTLDNQL 697 L L PIL D WC E + ++L Sbjct: 246642 LTLEPILVDSWCNEFNIISEL 246704 Score = 24.3 bits (51), Expect = 4.3 Identities = 9/22 (40%), Positives = 13/22 (58%) Frame = -2 Query: 474 CDCNCSDTQPQAPHCSDGQGHL 495 CDC CS+ + + G+GHL Sbjct: 160953 CDCRCSE*IYHRANWAPGKGHL 160888 Score = 23.5 bits (49), Expect = 7.3 Identities = 9/19 (47%), Positives = 12/19 (62%) Frame = +2 Query: 679 LAPILDDGWCKERTLDNQL 697 L PIL D WC E + ++L Sbjct: 222281 LEPILVDSWCNEFNIISEL 222337 Score = 23.1 bits (48), Expect = 9.6 Identities = 14/59 (23%), Positives = 19/59 (31%), Gaps = 1/59 (1%) Frame = +2 Query: 472 TLCDCNCSDTQPQAPHCSDGQGHLQCGV-CSCAPGRLGRLCECSVAELSSPDLESGCRA 529 T C +P C G + + C C + C S A + P S C A Sbjct: 98105 TRCRARAWKPRPGKGRCLRGSVTITTSISCGCGVTSISAACPSSTATCTKPLSRSTCNA 98281 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.320 0.136 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,393 Number of Sequences: 1 Number of extensions: 5803 Number of successful extensions: 20 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 15 length of query: 798 length of database: 107,549 effective HSP length: 77 effective length of query: 721 effective length of database: 107,472 effective search space: 77487312 effective search space used: 77487312 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124951|sp|P08514|ITAB_HUMAN Integrin alpha-IIb precursor (Platelet membrane glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen) (1039 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 51 2e-16 >super_15687 Length = 322648 Score = 51.2 bits (121), Expect(2) = 2e-16 Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 4/82 (4%) Frame = -3 Query: 448 FGFSL----RGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVKS 503 FG+SL GAVD+D+N YPD+IVG+ ++ V V R++P++ ++ +Q L + + Sbjct: 111623 FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQPRLIDVI-T 111447 Query: 504 CVLPQTKTPVSCFNIQMCVGAT 525 CV +C ++++C+ AT Sbjct: 111446 CVTGS----AACSSVRICLNAT 111393 Score = 49.7 bits (117), Expect(2) = 7e-16 Identities = 27/82 (32%), Positives = 49/82 (58%), Gaps = 4/82 (4%) Frame = -3 Query: 448 FGFSL----RGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVKS 503 FG+SL GAVD+D+N YPD+IVG+ ++ V V R++P++ ++ +Q + + Sbjct: 123773 FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQPRFIDVI-T 123597 Query: 504 CVLPQTKTPVSCFNIQMCVGAT 525 CV +C ++++C+ AT Sbjct: 123596 CVTGS----AACSSVRICLNAT 123543 Score = 47.4 bits (111), Expect(2) = 2e-16 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = -1 Query: 377 LLTGTQLYG-RFGSAIAPLGDLDRDGYNDIAVAAPY--GGPSGRGQVLVFLGQSEGLRSR 433 +L+G+ L G RFG ++A GDLD++GY+D+ + APY + G + V+ GL Sbjct: 111898 VLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTET 111719 Query: 434 PSQVLDSP 441 QV SP Sbjct: 111718 NRQVSLSP 111695 Score = 47.4 bits (111), Expect(2) = 7e-16 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = -1 Query: 377 LLTGTQLYG-RFGSAIAPLGDLDRDGYNDIAVAAPY--GGPSGRGQVLVFLGQSEGLRSR 433 +L+G+ L G RFG ++A GDLD++GY+D+ + APY + G + V+ GL Sbjct: 124048 VLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTET 123869 Query: 434 PSQVLDSP 441 QV SP Sbjct: 123868 NRQVSLSP 123845 Score = 43.5 bits (101), Expect = 9e-06 Identities = 21/49 (42%), Positives = 29/49 (58%) Frame = -2 Query: 315 QMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 363 Q +YFGH+V D+N D DLLV APLY + + G+V+LF+ Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNG----YDQGKVFLFM 112396 Score = 43.5 bits (101), Expect = 9e-06 Identities = 21/49 (42%), Positives = 29/49 (58%) Frame = -3 Query: 315 QMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFL 363 Q +YFGH+V D+N D DLLV APLY + + G+V+LF+ Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNG----YDQGKVFLFM 124542 Score = 38.1 bits (87), Expect = 4e-04 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = -1 Query: 436 QVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGA 470 QVL +G+ FG S+ A D+D NGY D+I+GA Sbjct: 111901 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGA 111797 Score = 38.1 bits (87), Expect = 4e-04 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = -1 Query: 436 QVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGA 470 QVL +G+ FG S+ A D+D NGY D+I+GA Sbjct: 124051 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGA 123947 Score = 23.9 bits (50), Expect = 7.5 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -1 Query: 283 EYVVGAPTWSWTLGAVEILDSYYQRLHRLRAEQMASYFGH 322 +YVV +PT+ V YY RLHR+ M + + H Sbjct: 191578 QYVVNSPTYH-----VLREPPYYSRLHRMSHPLMVTTWFH 191474 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.318 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340,831 Number of Sequences: 1 Number of extensions: 4736 Number of successful extensions: 25 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 25 length of query: 1039 length of database: 107,549 effective HSP length: 79 effective length of query: 960 effective length of database: 107,470 effective search space: 103171200 effective search space used: 103171200 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|13432176|sp|P18564|ITB6_HUMAN Integrin beta-6 precursor (788 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 24 4.3 >super_15687 Length = 322648 Score = 24.3 bits (51), Expect = 4.3 Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 8/61 (13%) Frame = +3 Query: 734 VSFHDRKEVAKFEAERSKAKWQTGTNPLYRGSTSTFKNVTYK--------HREKQKVDLS 785 +SFH E A+ E + + QTG LY+ + + T K HR+ +V S Sbjct: 241614 LSFHSLTEYAQAVYETTNRELQTGFTGLYQNVPTITGSCTPK*RQDI*VFHRDNTRVCKS 241793 Query: 786 T 786 T Sbjct: 241794 T 241796 Score = 24.3 bits (51), Expect = 4.3 Identities = 8/15 (53%), Positives = 9/15 (59%) Frame = +2 Query: 515 GDCYCGQCICHLSPY 529 G C CG +C LS Y Sbjct: 313223 GRCLCGDMVCRLSRY 313267 Score = 24.3 bits (51), Expect = 4.3 Identities = 11/19 (57%), Positives = 12/19 (62%), Gaps = 3/19 (15%) Frame = -1 Query: 515 GDCYCGQCIC---HLSPYG 530 G C CGQ IC HLS +G Sbjct: 184789 G*CKCGQIICNS*HLSTFG 184733 Score = 23.9 bits (50), Expect = 5.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 691 KTIIHSINEKDCPKPPNIPMIMLGVSLAILLIGVVLLCIW 730 + I+HS +++ CPK + ML + A LL G + C W Sbjct: 88755 QVIVHSCSKRYCPKSCKF*LQML--TCAALLFG-LFSCSW 88645 Score = 23.5 bits (49), Expect = 7.3 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Frame = +1 Query: 648 KCKLAGATISEEEDFSKDGSVSCSLQGENECLITFLITTDNEGKTIIHSINEK------D 701 K L+ I+++ + D + + GENEC+ N+G++ H I E+ Sbjct: 128764 KESLSQPNITQDTIITSDRPIRVLVYGENECISIKKTV*KNKGES-*HQITEEAI*TN*Q 128940 Query: 702 C--PKPPNIPMI 711 C P+P P I Sbjct: 128941 CRIPRPCTAPFI 128976 Score = 23.1 bits (48), Expect = 9.5 Identities = 11/27 (40%), Positives = 13/27 (47%), Gaps = 5/27 (18%) Frame = -2 Query: 463 NSSKCHH-----GNGSFQCGVCACHPG 484 N+ C H GN + C ACHPG Sbjct: 177723 NNGGCQHVCQPAGNTQYHC---ACHPG 177652 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.320 0.137 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 354,477 Number of Sequences: 1 Number of extensions: 6634 Number of successful extensions: 53 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 43 length of query: 788 length of database: 107,549 effective HSP length: 76 effective length of query: 712 effective length of database: 107,473 effective search space: 76520776 effective search space used: 76520776 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|12644170|sp|P23229|ITA6_HUMAN Integrin alpha-6 precursor (VLA-6) (CD49f) (1130 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 63 1e-19 >super_15687 Length = 322648 Score = 62.8 bits (151), Expect(2) = 1e-19 Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Frame = -3 Query: 462 QVLKGISPYFGYS----IAGNMDLDRNSYPDVAVGS-LSDSVTIFRSRPVINIQKTITVT 516 + LK FGYS +AG +D+D N YPDV VGS SDSV + RSRP+I++Q + + Sbjct: 123800 KTLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQ 123621 Query: 517 PNRIDLRQKTACGAPSGICLQVKSCFEYTAN----PAGYNPSISIVGTLEAEKERRKSGL 572 P ID+ C S C V+ C T P IS + + L Sbjct: 123620 PRFIDV---ITCVTGSAACSSVRICLNATFRKEHPPTNIGKHISHLAKTMLTRIENAHNL 123450 Query: 573 SSRVQ 577 S+ VQ Sbjct: 123449 SAHVQ 123435 Score = 62.4 bits (150), Expect(2) = 1e-19 Identities = 37/89 (41%), Positives = 49/89 (54%), Gaps = 5/89 (5%) Frame = -3 Query: 462 QVLKGISPYFGYS----IAGNMDLDRNSYPDVAVGS-LSDSVTIFRSRPVINIQKTITVT 516 + LK FGYS +AG +D+D N YPDV VGS SDSV + RSRP+I++Q + + Sbjct: 111650 KTLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQ 111471 Query: 517 PNRIDLRQKTACGAPSGICLQVKSCFEYT 545 P ID+ C S C V+ C T Sbjct: 111470 PRLIDV---ITCVTGSAACSSVRICLNAT 111393 Score = 47.4 bits (111), Expect(2) = 1e-19 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 7/69 (10%) Frame = -1 Query: 402 NVKPIRLNGTKDS--MFGIAVKNIGDINQDGYPDIAVGAPYDD-----LGKVFIYHGSAN 454 N +P L+G+ S FG++V + GD++Q+GY D+ +GAPY++ G +++Y+ S Sbjct: 124063 NHQPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHG 123884 Query: 455 GINTKPTQV 463 G+ QV Sbjct: 123883 GLTETNRQV 123857 Score = 47.4 bits (111), Expect(2) = 1e-19 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 7/69 (10%) Frame = -1 Query: 402 NVKPIRLNGTKDS--MFGIAVKNIGDINQDGYPDIAVGAPYDD-----LGKVFIYHGSAN 454 N +P L+G+ S FG++V + GD++Q+GY D+ +GAPY++ G +++Y+ S Sbjct: 111913 NHQPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHG 111734 Query: 455 GINTKPTQV 463 G+ QV Sbjct: 111733 GLTETNRQV 111707 Score = 45.1 bits (105), Expect = 3e-06 Identities = 18/43 (41%), Positives = 29/43 (66%) Frame = -3 Query: 355 FGYDVAVVDLNKDGWQDIVIGAPQYFDRDGEVGGAVYVYMNQQ 397 FG+ V +D+NKD + D+++ AP Y D +G G V+++MN Q Sbjct: 124661 FGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQ 124533 Score = 45.1 bits (105), Expect = 3e-06 Identities = 18/43 (41%), Positives = 29/43 (66%) Frame = -2 Query: 355 FGYDVAVVDLNKDGWQDIVIGAPQYFDRDGEVGGAVYVYMNQQ 397 FG+ V +D+NKD + D+++ AP Y D +G G V+++MN Q Sbjct: 112515 FGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQ 112387 Score = 40.4 bits (93), Expect = 8e-05 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -1 Query: 345 IFDGEGLASS-FGYDVAVV-DLNKDGWQDIVIGAPQYFDRDGEVGGAVYVYMNQQG 398 + G L+ + FG VA DL+++G+ D++IGAP Y + GA+YVY N G Sbjct: 124048 VLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAP-YEESTSTSSGAIYVYYNSHG 123884 Score = 40.4 bits (93), Expect = 8e-05 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -1 Query: 345 IFDGEGLASS-FGYDVAVV-DLNKDGWQDIVIGAPQYFDRDGEVGGAVYVYMNQQG 398 + G L+ + FG VA DL+++G+ D++IGAP Y + GA+YVY N G Sbjct: 111898 VLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAP-YEESTSTSSGAIYVYYNSHG 111734 Score = 32.0 bits (71), Expect = 0.030 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Frame = -1 Query: 462 QVLKGIS---PYFGYSIAGNMDLDRNSYPDVAVGSLSDSVTIFRSRPV---INIQKTITV 515 QVL G S FG S+A DLD+N Y DV +G+ + T S + N +T Sbjct: 124051 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTE 123872 Query: 516 TPNRIDLRQKTA 527 T ++ L A Sbjct: 123871 TNRQVSLSPSNA 123836 Score = 32.0 bits (71), Expect = 0.030 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Frame = -1 Query: 462 QVLKGIS---PYFGYSIAGNMDLDRNSYPDVAVGSLSDSVTIFRSRPV---INIQKTITV 515 QVL G S FG S+A DLD+N Y DV +G+ + T S + N +T Sbjct: 111901 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTE 111722 Query: 516 TPNRIDLRQKTA 527 T ++ L A Sbjct: 111721 TNRQVSLSPSNA 111686 Score = 30.0 bits (66), Expect = 0.11 Identities = 20/59 (33%), Positives = 34/59 (56%), Gaps = 6/59 (10%) Frame = -2 Query: 397 QGRWNNVKPIRLNGTKDSMFGIAVKNIGDINQDGYPDIAVGAP-YDDL-----GKVFIY 449 Q + +++ P + + + FG V + DIN+D Y D+ V AP Y+D+ GKVF++ Sbjct: 112572 QSQVHSIHPHGMWWQQGAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLF 112399 Score = 30.0 bits (66), Expect = 0.11 Identities = 20/59 (33%), Positives = 34/59 (56%), Gaps = 6/59 (10%) Frame = -3 Query: 397 QGRWNNVKPIRLNGTKDSMFGIAVKNIGDINQDGYPDIAVGAP-YDDL-----GKVFIY 449 Q + +++ P + + + FG V + DIN+D Y D+ V AP Y+D+ GKVF++ Sbjct: 124718 QSQVHSIHPHGMWWQQGAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLF 124545 Score = 23.9 bits (50), Expect = 8.2 Identities = 10/36 (27%), Positives = 18/36 (49%) Frame = +3 Query: 948 IDDNRKFSLFAERKYQTLNCSVNVNCVNIRCPLRGL 983 +D L RKY+ ++CS++ N N ++ L Sbjct: 94137 MDGGNNMML*TVRKYEAVHCSLDANMGNTLASMKDL 94244 Score = 23.9 bits (50), Expect = 8.2 Identities = 8/29 (27%), Positives = 15/29 (51%) Frame = +1 Query: 445 KVFIYHGSANGINTKPTQVLKGISPYFGY 473 ++F + G+ PT++ I+ YF Y Sbjct: 15214 RLFFFQNEQRGVCGNPTRIYNCIAVYFNY 15300 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.317 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 381,904 Number of Sequences: 1 Number of extensions: 5414 Number of successful extensions: 42 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 40 length of query: 1130 length of database: 107,549 effective HSP length: 79 effective length of query: 1051 effective length of database: 107,470 effective search space: 112950970 effective search space used: 112950970 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|1708572|sp|P11215|ITAM_HUMAN Integrin alpha-M precursor (Cell surface glycoprotein MAC-1 alpha subunit) (CR-3 alpha chain) (CD11b) (Leukocyte adhesion receptor MO1) (Neutrophil adherence receptor) (1152 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 36 0.002 >super_15687 Length = 322648 Score = 35.8 bits (81), Expect = 0.002 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Frame = -1 Query: 519 RFGAALTVLGDVNGDKLTDVAIGAPGEED---NRGAVYLFHGTSGSGISPSHSQ 569 RFG ++ GD++ + DV IGAP EE + GA+Y+++ + G G++ ++ Q Sbjct: 111868 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHG-GLTETNRQ 111710 Score = 35.8 bits (81), Expect = 0.002 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Frame = -1 Query: 519 RFGAALTVLGDVNGDKLTDVAIGAPGEED---NRGAVYLFHGTSGSGISPSHSQ 569 RFG ++ GD++ + DV IGAP EE + GA+Y+++ + G G++ ++ Q Sbjct: 124018 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHG-GLTETNRQ 123860 Score = 28.9 bits (63), Expect = 0.26 Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 3/37 (8%) Frame = -3 Query: 144 CPQEDS---DIAFLIDGSGSIIPHDFRRMKEFVSTVM 177 CPQ + DI L+DGS S++ H+F K +V ++ Sbjct: 116381 CPQISALKVDIIILLDGSTSVVAHNFNIGKVWVKNLL 116271 Score = 27.3 bits (59), Expect = 0.76 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 3/37 (8%) Frame = -3 Query: 144 CPQEDS---DIAFLIDGSGSIIPHDFRRMKEFVSTVM 177 CPQ + DI L+DGS S+ H+F K +V ++ Sbjct: 127178 CPQISALKVDIIILLDGSSSVEAHNFNIGKVWVKNLL 127068 Score = 27.3 bits (59), Expect = 0.76 Identities = 17/42 (40%), Positives = 21/42 (49%) Frame = -2 Query: 712 ETLKLQLPNCIEDPVSPIVLRLNFSLVGTPLSAFGNLRPVLA 753 E +K +LPN + P SP L VG L G RP+LA Sbjct: 32973 E*IKCELPNFRKLPTSPSSTALTRG*VGGDLGVSGARRPLLA 32848 Score = 25.0 bits (53), Expect = 3.8 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +3 Query: 987 QVTFSENLSSTCHTKERLPSHSDFLAELRKAPVVNCSIAVCQRIQCDIPFFGIQEEFNAT 1046 + +F+ENLS TK LPS + + + S VC ++ C P + +++ +N Sbjct: 293928 KTSFTENLSMVL*TKAPLPSSNCY---------IFLSSFVCFQVIC-FPIYRLKDVYNLV 294077 Query: 1047 LKGNLSFDWYIKTS 1060 + Y +T+ Sbjct: 294078 CLSQCVPNTYCRTT 294119 Score = 24.3 bits (51), Expect = 6.4 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +3 Query: 982 IWDRPQVTFSENLS 995 +WDR ++TF NLS Sbjct: 135342 VWDRVRITFHSNLS 135383 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,311 Number of Sequences: 1 Number of extensions: 5347 Number of successful extensions: 30 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 30 length of query: 1152 length of database: 107,549 effective HSP length: 79 effective length of query: 1073 effective length of database: 107,470 effective search space: 115315310 effective search space used: 115315310 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|1170591|sp|P20701|ITAL_HUMAN Integrin alpha-L precursor (Leukocyte adhesion glycoprotein LFA-1 alpha chain) (Leukocyte function associated molecule 1, alpha chain) (CD11a) (1170 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 42 3e-05 >super_15687 Length = 322648 Score = 42.0 bits (97), Expect = 3e-05 Identities = 19/48 (39%), Positives = 30/48 (61%), Gaps = 5/48 (10%) Frame = -1 Query: 520 RFGEAITALTDINGDGLVDVAVGAPLEE-----QGAVYIFNGRHGGLS 562 RFG ++ + D++ +G DV +GAP EE GA+Y++ HGGL+ Sbjct: 111868 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLT 111725 Score = 42.0 bits (97), Expect = 3e-05 Identities = 19/48 (39%), Positives = 30/48 (61%), Gaps = 5/48 (10%) Frame = -1 Query: 520 RFGEAITALTDINGDGLVDVAVGAPLEE-----QGAVYIFNGRHGGLS 562 RFG ++ + D++ +G DV +GAP EE GA+Y++ HGGL+ Sbjct: 124018 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLT 123875 Score = 33.1 bits (74), Expect = 0.014 Identities = 22/58 (37%), Positives = 30/58 (50%) Frame = -3 Query: 211 YVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEAT 268 Y+K + AL+ V + T T AIN TE + + P K+LI+ TDGEAT Sbjct: 114332 YIKIQFSTALIDGVVYPYGQTYTHSAINQAVTEFSQAGIAGIP---KLLIVATDGEAT 114168 Score = 30.4 bits (67), Expect = 0.091 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = -3 Query: 211 YVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEAT 268 Y++ + AL+ V + T+T AIN TE + + P K+LI+ TDGEAT Sbjct: 126392 YIEMQFSTALIDGVVYPHGQTDTDIAINQAVTEFSQAGIAGIP---KLLIVATDGEAT 126228 Score = 30.0 bits (66), Expect = 0.12 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Frame = +1 Query: 928 QDQEDSTLYVSFTPKGPKI--HQVKHMYQVRIQPSIHDHNIPTLEAVVGVPQPPSEGPIT 985 Q+ + + TP GP + HQ H + P + HN P L PQP S P Sbjct: 317245 QNSAPNPSFYYITPPGPLLNHHQAPHT-TLHTTPPLPPHN-PIL-----APQPTS--PCR 317397 Query: 986 HQWSVQMEPPVPCH 999 QW PP P H Sbjct: 317398 EQWHPV*SPPPPIH 317439 Score = 27.7 bits (60), Expect = 0.59 Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 8/48 (16%) Frame = -2 Query: 521 FGEAITALTDINGDGLVDVAVGAPL------EEQGAVYIF--NGRHGG 560 FG + A+ DIN D D+ V APL +QG V++F N H G Sbjct: 112515 FGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQTHPG 112375 Score = 27.7 bits (60), Expect = 0.59 Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 8/48 (16%) Frame = -3 Query: 521 FGEAITALTDINGDGLVDVAVGAPL------EEQGAVYIF--NGRHGG 560 FG + A+ DIN D D+ V APL +QG V++F N H G Sbjct: 124661 FGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQTHPG 124521 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 365,561 Number of Sequences: 1 Number of extensions: 5000 Number of successful extensions: 38 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 35 length of query: 1170 length of database: 107,549 effective HSP length: 79 effective length of query: 1091 effective length of database: 107,470 effective search space: 117249770 effective search space used: 117249770 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124970|sp|P18084|ITB5_HUMAN Integrin beta-5 precursor (799 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 27 0.87 >super_15687 Length = 322648 Score = 26.6 bits (57), Expect = 0.87 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +2 Query: 690 CVMMFTYVELPSGKSNLTVLREPECGNTPNAMTILLAVVGSILLVGLALLAIWKLLVTIH 749 CV+ + S N + RE CGNT + +LL I + +++ A+W +++++ Sbjct: 97604 CVLTV*VATVWSHSGNAIICREINCGNT---L*VLLVSTEYIHCLFVSIFAVW*WVISLY 97774 Score = 23.5 bits (49), Expect = 7.4 Identities = 8/26 (30%), Positives = 16/26 (60%) Frame = -3 Query: 719 NAMTILLAVVGSILLVGLALLAIWKL 744 N I+ +VG + L+G+ + +WK+ Sbjct: 119984 NLGAIIGGIVGGLALMGIIIAVMWKV 119907 Score = 23.1 bits (48), Expect = 9.6 Identities = 11/27 (40%), Positives = 15/27 (54%) Frame = +2 Query: 690 CVMMFTYVELPSGKSNLTVLREPECGN 716 C+ M + V L K+ + VLRE C N Sbjct: 45794 CLYMKSTVALQCWKNKMAVLREELCKN 45874 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.321 0.137 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,186 Number of Sequences: 1 Number of extensions: 6230 Number of successful extensions: 29 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 29 length of query: 799 length of database: 107,549 effective HSP length: 77 effective length of query: 722 effective length of database: 107,472 effective search space: 77594784 effective search space used: 77594784 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124963|sp|P05556|ITB1_HUMAN Integrin beta-1 precursor (Fibronectin receptor beta subunit) (CD29 antigen) (Integrin VLA-4 beta subunit) (798 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 24 5.6 >super_15687 Length = 322648 Score = 23.9 bits (50), Expect = 5.6 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +3 Query: 401 CKNGVNGTGENG 412 CKNGVN T NG Sbjct: 254715 CKNGVNVTAHNG 254750 Score = 23.1 bits (48), Expect = 9.6 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = +2 Query: 529 GECVCGQCVCR 539 G C+CG VCR Sbjct: 313223 GRCLCGDMVCR 313255 Score = 23.1 bits (48), Expect = 9.6 Identities = 9/28 (32%), Positives = 14/28 (49%) Frame = -2 Query: 614 ECGVCKCTDPKFQGQTCEMCQTCLGVCA 641 +C VCK + + C+ C G+CA Sbjct: 71553 KCRVCKSLVHQIGAKFCQGCAYKKGICA 71470 Score = 23.1 bits (48), Expect = 9.6 Identities = 10/29 (34%), Positives = 18/29 (61%) Frame = +1 Query: 289 KLGGIVLPNDGQCHLENNMYTMSHYYDYP 317 K+G ++L + G CHL ++T +Y+ P Sbjct: 221941 KMGHLLLGDFGTCHL---LFTQYFWYNTP 222018 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.317 0.135 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 356,834 Number of Sequences: 1 Number of extensions: 7151 Number of successful extensions: 28 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 24 length of query: 798 length of database: 107,549 effective HSP length: 77 effective length of query: 721 effective length of database: 107,472 effective search space: 77487312 effective search space used: 77487312 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124960|sp|P20702|ITAX_HUMAN Integrin alpha-X precursor (Leukocyte adhesion glycoprotein p150,95 alpha chain) (Leukocyte adhesion receptor p150,95) (CD11c) (Leu M5) (1163 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 35 0.003 >super_15687 Length = 322648 Score = 35.4 bits (80), Expect = 0.003 Identities = 21/61 (34%), Positives = 35/61 (56%), Gaps = 11/61 (18%) Frame = -1 Query: 520 RFGAALTVLGDVNGDKLTDVVIGAPGEEE---NRGAVYLFHGVLG--------PSISPSH 568 RFG ++ GD++ + DV+IGAP EE + GA+Y+++ G S+SPS+ Sbjct: 124018 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQVSLSPSN 123839 Query: 569 S 569 + Sbjct: 123838 A 123836 Score = 35.4 bits (80), Expect = 0.003 Identities = 21/61 (34%), Positives = 35/61 (56%), Gaps = 11/61 (18%) Frame = -1 Query: 520 RFGAALTVLGDVNGDKLTDVVIGAPGEEE---NRGAVYLFHGVLG--------PSISPSH 568 RFG ++ GD++ + DV+IGAP EE + GA+Y+++ G S+SPS+ Sbjct: 111868 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQVSLSPSN 111689 Query: 569 S 569 + Sbjct: 111688 A 111686 Score = 30.0 bits (66), Expect = 0.12 Identities = 14/49 (28%), Positives = 28/49 (56%), Gaps = 3/49 (6%) Frame = -3 Query: 137 RLPVSRQECPR---QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ 182 ++ + ECP+ + DI+ L+DGS S+ + NF +V+ ++ F+ Sbjct: 127202 KITIKFSECPQISALKVDIIILLDGSSSVEAHNFNIGKVWVKNLLLNFR 127056 Score = 28.1 bits (61), Expect = 0.45 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = -3 Query: 135 TQRLPVSRQECPR---QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ 182 + ++ + ECP+ + DI+ L+DGS S+ + NF +V+ ++ F+ Sbjct: 116411 SSKITIKFLECPQISALKVDIIILLDGSTSVVAHNFNIGKVWVKNLLLNFR 116259 Score = 27.7 bits (60), Expect = 0.59 Identities = 22/63 (34%), Positives = 31/63 (48%) Frame = -3 Query: 271 DVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLK 330 DV+ AAGII ++G+G N EL IA P + +F+V F L I L+ Sbjct: 125990 DVLLPNRAAGIILVSVGIG----NGVVTSELETIAGSP--DRVFQVNGFANLNTILAPLQ 125829 Query: 331 EKI 333 + I Sbjct: 125828 KVI 125820 Score = 26.9 bits (58), Expect = 1.00 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = +1 Query: 715 FNLLLPSCVEDSVTPITLRLNFTLVGKPLLAFRNLRPMLAALAQRYFTASLPFEKNCGAD 774 F L+P+C+ +++ + NF L G P A P+++ L Y + N Sbjct: 254842 FTYLMPACISSAMSLMRCACNFVLTGAPETAM*P-SPIVSTLKMAYLKLHMCAHFNSKKT 255018 Query: 775 HIC 777 IC Sbjct: 255019 IIC 255027 Score = 26.2 bits (56), Expect = 1.7 Identities = 9/28 (32%), Positives = 16/28 (57%) Frame = +3 Query: 715 FNLLLPSCVEDSVTPITLRLNFTLVGKP 742 F L+P+C+ +++ + NF L G P Sbjct: 223317 FTYLMPACISSAMSLMRCACNFVLTGAP 223400 Score = 23.9 bits (50), Expect = 8.5 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -3 Query: 605 GARGQVLLLRTRPVLWVGV 623 G RGQVL + + VLW+G+ Sbjct: 47681 GQRGQVLHVLQQGVLWLGL 47625 Score = 23.9 bits (50), Expect = 8.5 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -3 Query: 749 LRPMLAALAQRYFTASLPFEK 769 + PML ++ Y T+ LPF K Sbjct: 42998 MSPMLQCMSHSYLTSHLPFYK 42936 Score = 23.9 bits (50), Expect = 8.5 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = -2 Query: 375 WSGGAFLYPPNMSP 388 W GG FL PP P Sbjct: 300738 WRGGVFLLPPKNGP 300697 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 385,884 Number of Sequences: 1 Number of extensions: 5609 Number of successful extensions: 27 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 27 length of query: 1163 length of database: 107,549 effective HSP length: 79 effective length of query: 1084 effective length of database: 107,470 effective search space: 116497480 effective search space used: 116497480 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124959|sp|P06756|ITAV_HUMAN Integrin alpha-V precursor (Vitronectin receptor alpha subunit) (CD51 antigen) (1048 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 58 8e-18 >super_15687 Length = 322648 Score = 57.8 bits (138), Expect(2) = 8e-18 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 4/82 (4%) Frame = -3 Query: 434 FGYSM----KGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNK 489 FGYS+ GA D+D N YPD+IVG+ D + R+RP+I V A +E+ P ++ D Sbjct: 111623 FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQPRLI--DVI 111450 Query: 490 TCSLPGTALKVSCFNVRFCLKA 511 TC + G+A +C +VR CL A Sbjct: 111449 TC-VTGSA---ACSSVRICLNA 111396 Score = 57.0 bits (136), Expect(2) = 1e-17 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%) Frame = -3 Query: 434 FGYSM----KGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNK 489 FGYS+ GA D+D N YPD+IVG+ D + R+RP+I V A +E+ P + D Sbjct: 123773 FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQPRFI--DVI 123600 Query: 490 TCSLPGTALKVSCFNVRFCLKA 511 TC + G+A +C +VR CL A Sbjct: 123599 TC-VTGSA---ACSSVRICLNA 123546 Score = 45.8 bits (107), Expect(2) = 8e-18 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -1 Query: 368 ARFGSAIAPLGDLDQDGFNDIAIAAPY--GGEDKKGIVYIFNGRSTGLNAVPSQI 420 ARFG ++A GDLDQ+G++D+ I APY G +Y++ GL Q+ Sbjct: 111871 ARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQV 111707 Score = 45.8 bits (107), Expect(2) = 1e-17 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -1 Query: 368 ARFGSAIAPLGDLDQDGFNDIAIAAPY--GGEDKKGIVYIFNGRSTGLNAVPSQI 420 ARFG ++A GDLDQ+G++D+ I APY G +Y++ GL Q+ Sbjct: 124021 ARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQV 123857 Score = 40.0 bits (92), Expect = 1e-04 Identities = 17/32 (53%), Positives = 21/32 (65%) Frame = -3 Query: 301 QMAAYFGFSVAATDINGDDYADVFIGAPLFMD 332 Q AYFG +V A DIN D Y D+ + APL+ D Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYND 124581 Score = 40.0 bits (92), Expect = 1e-04 Identities = 17/32 (53%), Positives = 21/32 (65%) Frame = -2 Query: 301 QMAAYFGFSVAATDINGDDYADVFIGAPLFMD 332 Q AYFG +V A DIN D Y D+ + APL+ D Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYND 112435 Score = 33.1 bits (74), Expect = 0.012 Identities = 13/23 (56%), Positives = 18/23 (77%) Frame = -1 Query: 434 FGYSMKGATDIDKNGYPDLIVGA 456 FG S+ A D+D+NGY D+I+GA Sbjct: 111865 FGMSVASAGDLDQNGYDDVIIGA 111797 Score = 33.1 bits (74), Expect = 0.012 Identities = 13/23 (56%), Positives = 18/23 (77%) Frame = -1 Query: 434 FGYSMKGATDIDKNGYPDLIVGA 456 FG S+ A D+D+NGY D+I+GA Sbjct: 124015 FGMSVASAGDLDQNGYDDVIIGA 123947 Score = 26.2 bits (56), Expect = 1.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 253 GYSVAVGDFNGDGIDDFVSGVPR 275 GYSV G+F G + SGVP+ Sbjct: 124894 GYSVTSGNFYGGATEYIASGVPK 124826 Score = 26.2 bits (56), Expect = 1.5 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -2 Query: 620 AHILLDCGEDNVCKPKL 636 +H+LL+C E N+C P + Sbjct: 115455 SHMLLNCDESNLCSPTI 115405 Score = 26.2 bits (56), Expect = 1.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 253 GYSVAVGDFNGDGIDDFVSGVPR 275 GYSV G+F G + SGVP+ Sbjct: 112748 GYSVTSGNFYGGATEYIASGVPK 112680 Score = 24.3 bits (51), Expect = 5.8 Identities = 13/34 (38%), Positives = 14/34 (40%) Frame = -2 Query: 904 CGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTET 937 C C I+C V RLD S L LW T Sbjct: 108186 CNDVICRSILCTVSRLDPFFSINLIASFKLWLPT 108085 Score = 23.5 bits (49), Expect = 9.9 Identities = 13/34 (38%), Positives = 13/34 (38%) Frame = -1 Query: 904 CGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTET 937 C C I C V RLD S L LW T Sbjct: 120781 CNDVICRSISCTVSRLDTFFSINLIASFKLWLPT 120680 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,534 Number of Sequences: 1 Number of extensions: 4738 Number of successful extensions: 27 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 27 length of query: 1048 length of database: 107,549 effective HSP length: 79 effective length of query: 969 effective length of database: 107,470 effective search space: 104138430 effective search space used: 104138430 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|12643723|sp|Q13683|ITA7_HUMAN Integrin alpha-7 precursor (1181 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 61 6e-18 >super_15687 Length = 322648 Score = 61.2 bits (147), Expect = 5e-11 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 11/106 (10%) Frame = -3 Query: 460 GSSLGVVAKPSQVLEGEAVG------IKSFGYSL----SGSLDMDGNQYPDLLVGS-LAD 508 G S+ + + L +G + FGYSL +G++D+D N YPD++VGS +D Sbjct: 123860 GESVAIECSRNTPLSQRIIGKTLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSD 123681 Query: 509 TAVLFRARPILHVSHEVSIAPRSIDLEQPNCAGGHSVCVDLRVCFS 554 + + R+RPI+ V V + PR ID+ C G + C +R+C + Sbjct: 123680 SVFVLRSRPIIDVQARVELQPRFIDV--ITCVTGSAACSSVRICLN 123549 Score = 60.8 bits (146), Expect(2) = 6e-18 Identities = 31/80 (38%), Positives = 49/80 (60%), Gaps = 5/80 (6%) Frame = -3 Query: 480 IKSFGYSL----SGSLDMDGNQYPDLLVGS-LADTAVLFRARPILHVSHEVSIAPRSIDL 534 + FGYSL +G++D+D N YPD++VGS +D+ + R+RPI+ V V + PR ID+ Sbjct: 111632 VLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQARVELQPRLIDV 111453 Query: 535 EQPNCAGGHSVCVDLRVCFS 554 C G + C +R+C + Sbjct: 111452 --ITCVTGSAACSSVRICLN 111399 Score = 43.5 bits (101), Expect(2) = 6e-18 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Frame = -1 Query: 410 AGISPLRLCGSPDS--MFGISLAVLGDLNQDGFPDIAVGAPFD-----GDGKVFIYHGSS 462 A P L GS S FG+S+A GDL+Q+G+ D+ +GAP++ G +++Y+ S Sbjct: 111916 ANHQPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSH 111737 Query: 463 LGVVAKPSQV 472 G+ QV Sbjct: 111736 GGLTETNRQV 111707 Score = 43.5 bits (101), Expect = 1e-05 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Frame = -1 Query: 410 AGISPLRLCGSPDS--MFGISLAVLGDLNQDGFPDIAVGAPFD-----GDGKVFIYHGSS 462 A P L GS S FG+S+A GDL+Q+G+ D+ +GAP++ G +++Y+ S Sbjct: 124066 ANHQPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSH 123887 Query: 463 LGVVAKPSQV 472 G+ QV Sbjct: 123886 GGLTETNRQV 123857 Score = 42.7 bits (99), Expect(2) = 2e-06 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Frame = -1 Query: 354 MLSGERLTSG-FGYSLAVA-DLNSDGWPDLIVGAPYFFERQEELGGAVYVYLNQGG 407 +LSG L+ FG S+A A DL+ +G+ D+I+GAPY E GA+YVY N G Sbjct: 111898 VLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPY-EESTSTSSGAIYVYYNSHG 111734 Score = 42.7 bits (99), Expect(2) = 2e-06 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Frame = -1 Query: 354 MLSGERLTSG-FGYSLAVA-DLNSDGWPDLIVGAPYFFERQEELGGAVYVYLNQGG 407 +LSG L+ FG S+A A DL+ +G+ D+I+GAPY E GA+YVY N G Sbjct: 124048 VLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPY-EESTSTSSGAIYVYYNSHG 123884 Score = 35.0 bits (79), Expect = 0.004 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -3 Query: 364 FGYSLAVADLNSDGWPDLIVGAPYFFERQEELGGAVYVYLNQGGH 408 FG+++ D+N D + DL+V AP + + G V++++N H Sbjct: 124661 FGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQTH 124527 Score = 35.0 bits (79), Expect = 0.004 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -2 Query: 364 FGYSLAVADLNSDGWPDLIVGAPYFFERQEELGGAVYVYLNQGGH 408 FG+++ D+N D + DL+V AP + + G V++++N H Sbjct: 112515 FGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQTH 112381 Score = 32.3 bits (72), Expect = 0.024 Identities = 21/77 (27%), Positives = 41/77 (52%), Gaps = 10/77 (12%) Frame = -1 Query: 471 QVLEGEAVGIKSFGYSLSGSLDMDGNQYPDLLVGSLAD--TAVLFRARPILHVSH----- 523 QVL G ++ FG S++ + D+D N Y D+++G+ + T+ A + + SH Sbjct: 124051 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTE 123872 Query: 524 ---EVSIAPRSIDLEQP 537 +VS++P + + +P Sbjct: 123871 TNRQVSLSPSNAHVTRP 123821 Score = 32.0 bits (71), Expect = 0.032 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 10/77 (12%) Frame = -1 Query: 471 QVLEGEAVGIKSFGYSLSGSLDMDGNQYPDLLVGSLAD--TAVLFRARPILHVSH----- 523 QVL G ++ FG S++ + D+D N Y D+++G+ + T+ A + + SH Sbjct: 111901 QVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTE 111722 Query: 524 ---EVSIAPRSIDLEQP 537 +VS++P + + P Sbjct: 111721 TNRQVSLSPSNAHVTHP 111671 Score = 26.6 bits (57), Expect = 1.3 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 5/28 (17%) Frame = -3 Query: 364 FGYSLA-----VADLNSDGWPDLIVGAP 386 FGYSL D++++ +PD+IVG+P Sbjct: 123773 FGYSLVNGVAGAVDVDNNHYPDVIVGSP 123690 Score = 26.6 bits (57), Expect = 1.3 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 5/28 (17%) Frame = -3 Query: 364 FGYSLA-----VADLNSDGWPDLIVGAP 386 FGYSL D++++ +PD+IVG+P Sbjct: 111623 FGYSLVNGVAGAVDVDNNHYPDVIVGSP 111540 Score = 21.9 bits (45), Expect(2) = 2e-06 Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 4/28 (14%) Frame = -3 Query: 425 FGISLA--VLG--DLNQDGFPDIAVGAP 448 FG SL V G D++ + +PD+ VG+P Sbjct: 111623 FGYSLVNGVAGAVDVDNNHYPDVIVGSP 111540 Score = 21.9 bits (45), Expect(2) = 2e-06 Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 4/28 (14%) Frame = -3 Query: 425 FGISLA--VLG--DLNQDGFPDIAVGAP 448 FG SL V G D++ + +PD+ VG+P Sbjct: 123773 FGYSLVNGVAGAVDVDNNHYPDVIVGSP 123690 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 387,264 Number of Sequences: 1 Number of extensions: 5258 Number of successful extensions: 28 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 28 length of query: 1181 length of database: 107,549 effective HSP length: 80 effective length of query: 1101 effective length of database: 107,469 effective search space: 118323369 effective search space used: 118323369 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|12643639|sp|O75578|ITAG_HUMAN Integrin alpha-10 precursor (1167 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 46 2e-06 >super_15687 Length = 322648 Score = 45.8 bits (107), Expect = 2e-06 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = -1 Query: 547 ARFGFAMGALPDLNQDGFADVAVGAPLEDG---HQGALYLYHGTQSGVRPHPAQRIAAAS 603 ARFG ++ + DL+Q+G+ DV +GAP E+ GA+Y+Y+ + G+ Q + S Sbjct: 124021 ARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQVSLSPS 123842 Query: 604 MPHALSYFGR 613 H F R Sbjct: 123841 NAHVTRPFRR 123812 Score = 45.8 bits (107), Expect = 2e-06 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = -1 Query: 547 ARFGFAMGALPDLNQDGFADVAVGAPLEDG---HQGALYLYHGTQSGVRPHPAQRIAAAS 603 ARFG ++ + DL+Q+G+ DV +GAP E+ GA+Y+Y+ + G+ Q + S Sbjct: 111871 ARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQVSLSPS 111692 Query: 604 MPHALSYFGR 613 H F R Sbjct: 111691 NAHVTHPFRR 111662 Score = 33.5 bits (75), Expect = 0.011 Identities = 15/46 (32%), Positives = 29/46 (62%) Frame = -3 Query: 481 QIGSYFGSELCPLDTDRDGTTDVLLVAAPMFLGPQNKETGRVYVYL 526 Q G+YFG + +D ++D D LLV+AP++ + G+V++++ Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLFM 124542 Score = 33.5 bits (75), Expect = 0.011 Identities = 15/46 (32%), Positives = 29/46 (62%) Frame = -2 Query: 481 QIGSYFGSELCPLDTDRDGTTDVLLVAAPMFLGPQNKETGRVYVYL 526 Q G+YFG + +D ++D D LLV+AP++ + G+V++++ Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLFM 112396 Score = 31.2 bits (69), Expect = 0.053 Identities = 23/70 (32%), Positives = 36/70 (50%), Gaps = 4/70 (5%) Frame = -3 Query: 545 QDARFGFAMGALPDLNQDGFADVAVGAPLEDG----HQGALYLYHGTQSGVRPHPAQRIA 600 Q A FG + A+ D+N+D + D+ V APL + QG ++L+ Q+ HP ++ Sbjct: 124673 QGAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQT----HPGHQM- 124512 Query: 601 AASMPHALSY 610 S P L Y Sbjct: 124511 WVSHPSTLGY 124482 Score = 31.2 bits (69), Expect = 0.053 Identities = 23/70 (32%), Positives = 36/70 (50%), Gaps = 4/70 (5%) Frame = -2 Query: 545 QDARFGFAMGALPDLNQDGFADVAVGAPLEDG----HQGALYLYHGTQSGVRPHPAQRIA 600 Q A FG + A+ D+N+D + D+ V APL + QG ++L+ Q+ HP ++ Sbjct: 112527 QGAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNNQT----HPGHQM- 112366 Query: 601 AASMPHALSY 610 S P L Y Sbjct: 112365 WVSHPSTLGY 112336 Score = 25.0 bits (53), Expect = 3.8 Identities = 10/35 (28%), Positives = 18/35 (50%) Frame = +1 Query: 921 NGTLQENTAQTSAYIQYEPHLLFSSESTLHRYEVH 955 +GT+++ SA I+Y+ + S HR+ H Sbjct: 10948 HGTMEQCATWVSAKIEYQSRQTLHNSSRYHRHNKH 11052 Score = 25.0 bits (53), Expect = 3.8 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -1 Query: 56 MLVGAPWDGPSGDRRGDVYRCPV 78 +L+GAP SG ++G V++C + Sbjct: 128041 LLIGAPGYTSSGFKKGAVFKCSI 127973 Score = 25.0 bits (53), Expect = 3.8 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -3 Query: 56 MLVGAPWDGPSGDRRGDVYRCPV 78 +L+GAP SG ++G V++C + Sbjct: 116960 LLIGAPGFTSSGFKKGAVFKCSI 116892 Score = 24.6 bits (52), Expect = 5.0 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Frame = +1 Query: 751 RPVALTVTFALDNTTKPGPVLNEGSPTSIQK---------LVPFSKDCGPDNEC 795 RP++LT + N + GP+ G T + K + P ++ C ++C Sbjct: 120142 RPISLTKGLQIQNLSLAGPLCPRGVFTKLNKCFNSTQQTAIAPVTRRCPRADDC 120303 Score = 24.6 bits (52), Expect = 5.0 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 11/56 (19%) Frame = +3 Query: 751 RPVALTVTFALDNTTKPGPVLNEG-----------SPTSIQKLVPFSKDCGPDNEC 795 RP++LT + N + GP+ G +PT + P ++ C ++C Sbjct: 107541 RPISLTKGLQIQNLSLAGPLCPRGLLVFTKLNKCLNPTQQTAIAPVTRRCPRADDC 107708 Score = 24.3 bits (51), Expect = 6.5 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +3 Query: 745 DTSDYLRPVALTVTFA 760 DT DYLRPV++ +F+ Sbjct: 190704 DTKDYLRPVSIHQSFS 190751 Score = 23.9 bits (50), Expect = 8.5 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = -2 Query: 705 DEWTAGARAAFDGSGQRLSPRR 726 D W +GAR +G G++L+ + Sbjct: 71673 DPWKSGARNTTEGGGRKLNENK 71608 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.320 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 369,772 Number of Sequences: 1 Number of extensions: 5175 Number of successful extensions: 27 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 27 length of query: 1167 length of database: 107,549 effective HSP length: 79 effective length of query: 1088 effective length of database: 107,470 effective search space: 116927360 effective search space used: 116927360 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8488987|sp|P38570|ITAE_HUMAN Integrin alpha-E precursor (Mucosal lymphocyte-1 antigen) (HML-1 antigen) (CD103 antigen) (Integrin alpha-IEL) (1179 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 45 4e-06 >super_15687 Length = 322648 Score = 45.1 bits (105), Expect = 4e-06 Identities = 26/68 (38%), Positives = 38/68 (55%) Frame = -1 Query: 564 RILSGHPGFTNARFGFAMAAMGDLSQDKLTDVAIGAPLEGFGADDGASFGSVYIYNGHWD 623 ++LSG + ARFG ++A+ GDL Q+ DV IGAP E S G++Y+Y Sbjct: 124051 QVLSGS-SLSGARFGMSVASAGDLDQNGYDDVIIGAPYE---ESTSTSSGAIYVYYNSHG 123884 Query: 624 GLSASPSQ 631 GL+ + Q Sbjct: 123883 GLTETNRQ 123860 Score = 45.1 bits (105), Expect = 4e-06 Identities = 26/68 (38%), Positives = 38/68 (55%) Frame = -1 Query: 564 RILSGHPGFTNARFGFAMAAMGDLSQDKLTDVAIGAPLEGFGADDGASFGSVYIYNGHWD 623 ++LSG + ARFG ++A+ GDL Q+ DV IGAP E S G++Y+Y Sbjct: 111901 QVLSGS-SLSGARFGMSVASAGDLDQNGYDDVIIGAPYE---ESTSTSSGAIYVYYNSHG 111734 Query: 624 GLSASPSQ 631 GL+ + Q Sbjct: 111733 GLTETNRQ 111710 Score = 25.4 bits (54), Expect = 2.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 569 HPGFTNARFGFAMAAMGDLSQDKLTD 594 +PGFT FGF + A DL ++T+ Sbjct: 193666 YPGFTTQNFGFCIFAFLDLVV*QITE 193589 Score = 25.0 bits (53), Expect = 3.8 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -3 Query: 886 PPSPNIQCDDPQPVASVLIM 905 P P+ QC+ QP +SVL++ Sbjct: 244343 PSGPSFQCNSDQPNSSVLML 244284 Score = 24.6 bits (52), Expect = 5.0 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +1 Query: 99 RSHHGVLICIQVLVRRPH 116 + H G +IC+QV + PH Sbjct: 169594 KGHEGSVICLQVNINDPH 169647 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389,177 Number of Sequences: 1 Number of extensions: 5751 Number of successful extensions: 32 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 32 length of query: 1179 length of database: 107,549 effective HSP length: 80 effective length of query: 1099 effective length of database: 107,469 effective search space: 118108431 effective search space used: 118108431 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|12643894|sp|Q9UKX5|ITAH_HUMAN Integrin alpha-11 precursor (1189 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 55 3e-09 >super_15687 Length = 322648 Score = 55.5 bits (132), Expect = 3e-09 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 3/58 (5%) Frame = -1 Query: 536 SYQNARFGSSIASVRDLNQDSYNDVVVGAPLEDN---HAGAIYIFHGFRGSILKTPKQ 590 S ARFG S+AS DL+Q+ Y+DV++GAP E++ +GAIY+++ G + +T +Q Sbjct: 124033 SLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQ 123860 Score = 55.5 bits (132), Expect = 3e-09 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 3/58 (5%) Frame = -1 Query: 536 SYQNARFGSSIASVRDLNQDSYNDVVVGAPLEDN---HAGAIYIFHGFRGSILKTPKQ 590 S ARFG S+AS DL+Q+ Y+DV++GAP E++ +GAIY+++ G + +T +Q Sbjct: 111883 SLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQ 111710 Score = 38.1 bits (87), Expect = 4e-04 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Frame = -3 Query: 466 TIHQAMRGQQIGSYFGSEITSVDIDGDGVTDVLLVGAPMYFN-EGRERGKVYVY 518 +IH Q G+YFG + ++DI+ D D LLV AP+Y + G ++GKV+++ Sbjct: 124703 SIHPHGMWWQQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLF 124545 Score = 38.1 bits (87), Expect = 4e-04 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Frame = -2 Query: 466 TIHQAMRGQQIGSYFGSEITSVDIDGDGVTDVLLVGAPMYFN-EGRERGKVYVY 518 +IH Q G+YFG + ++DI+ D D LLV AP+Y + G ++GKV+++ Sbjct: 112557 SIHPHGMWWQQGAYFGHTVVAMDINKDSYDD-LLVSAPLYNDVNGYDQGKVFLF 112399 Score = 33.1 bits (74), Expect = 0.014 Identities = 16/44 (36%), Positives = 30/44 (67%), Gaps = 4/44 (9%) Frame = -3 Query: 538 QNARFGSSIASVRDLNQDSYNDVVVGAPLEDN----HAGAIYIF 577 Q A FG ++ ++ D+N+DSY+D++V APL ++ G +++F Sbjct: 124673 QGAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLF 124545 Score = 33.1 bits (74), Expect = 0.014 Identities = 16/44 (36%), Positives = 30/44 (67%), Gaps = 4/44 (9%) Frame = -2 Query: 538 QNARFGSSIASVRDLNQDSYNDVVVGAPLEDN----HAGAIYIF 577 Q A FG ++ ++ D+N+DSY+D++V APL ++ G +++F Sbjct: 112527 QGAYFGHTVVAM-DINKDSYDDLLVSAPLYNDVNGYDQGKVFLF 112399 Score = 30.8 bits (68), Expect(2) = 2e-04 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -1 Query: 469 QAMRGQQI-GSYFGSEITSV-DIDGDGVTDVLLVGAPMYFNEGRERGKVYVY 518 Q + G + G+ FG + S D+D +G DV ++GAP + G +YVY Sbjct: 111901 QVLSGSSLSGARFGMSVASAGDLDQNGYDDV-IIGAPYEESTSTSSGAIYVY 111749 Score = 30.8 bits (68), Expect = 0.071 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -1 Query: 469 QAMRGQQI-GSYFGSEITSV-DIDGDGVTDVLLVGAPMYFNEGRERGKVYVY 518 Q + G + G+ FG + S D+D +G DV ++GAP + G +YVY Sbjct: 124051 QVLSGSSLSGARFGMSVASAGDLDQNGYDDV-IIGAPYEESTSTSSGAIYVY 123899 Score = 28.5 bits (62), Expect = 0.35 Identities = 20/64 (31%), Positives = 32/64 (49%), Gaps = 5/64 (7%) Frame = -1 Query: 29 KPRVIPGSRT--AFFGYTVQQH---DISGNKWLVVGAPLETNGYQKTGDVYKCPVIHGNC 83 +P+V+ GS A FG +V D +G +++GAP E + +G +Y HG Sbjct: 111907 QPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGL 111728 Query: 84 TKLN 87 T+ N Sbjct: 111727 TETN 111716 Score = 28.5 bits (62), Expect = 0.35 Identities = 20/64 (31%), Positives = 32/64 (49%), Gaps = 5/64 (7%) Frame = -1 Query: 29 KPRVIPGSRT--AFFGYTVQQH---DISGNKWLVVGAPLETNGYQKTGDVYKCPVIHGNC 83 +P+V+ GS A FG +V D +G +++GAP E + +G +Y HG Sbjct: 124057 QPQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGL 123878 Query: 84 TKLN 87 T+ N Sbjct: 123877 TETN 123866 Score = 27.3 bits (59), Expect = 0.78 Identities = 18/79 (22%), Positives = 36/79 (44%), Gaps = 4/79 (5%) Frame = -3 Query: 495 TDVLLVGAPMYFNEGRERGKVYVYELRQN----RFVYNGTLKDSHSYQNARFGSSIASVR 550 +++ L+ P ++ G+ E +N + + TLK S + +A Sbjct: 123914 SNLCLLQLPWRAYRDKQTGESVAIECSRNTPLSQRIIGKTLKSSVLQFGYSLVNGVAGAV 123735 Query: 551 DLNQDSYNDVVVGAPLEDN 569 D++ + Y DV+VG+P D+ Sbjct: 123734 DVDNNHYPDVIVGSPRSDS 123678 Score = 26.9 bits (58), Expect = 1.0 Identities = 17/56 (30%), Positives = 32/56 (56%) Frame = -3 Query: 24 NMDTRKPRVIPGSRTAFFGYTVQQHDISGNKWLVVGAPLETNGYQKTGDVYKCPVI 79 N++ R R++ GS G ++ + +S + L++GAP T+ K G V+KC ++ Sbjct: 117050 NINFRAHRIV-GSLFG*IG*SINTNFLSSTE-LLIGAPGFTSSGFKKGAVFKCSIL 116889 Score = 26.6 bits (57), Expect(2) = 2e-04 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -3 Query: 530 TLKDSHSYQNARFGSSIASVRDLNQDSYNDVVVGAPLEDN 569 TLK S + +A D++ + Y DV+VG+P D+ Sbjct: 111647 TLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDS 111528 Score = 25.8 bits (55), Expect = 2.3 Identities = 19/69 (27%), Positives = 34/69 (48%), Gaps = 21/69 (30%) Frame = -1 Query: 354 GTNKNETSFGLEMSQTGFSSHV--VEDGVL-------------------LGAVGAYDWNG 392 G++ N+T+ L Q GF++H+ V G+L +GA+G+YD +G Sbjct: 125368 GSSSNKTN-ELAQCQFGFNAHISKVRSGMLASPI*IKQSVFPT*TNNLYVGAIGSYDRSG 125192 Query: 393 AVLKETSAG 401 + + S+G Sbjct: 125191 STVDFMSSG 125165 Score = 25.4 bits (54), Expect = 3.0 Identities = 16/57 (28%), Positives = 23/57 (40%) Frame = +2 Query: 83 CTKLNLGRVTLSNVSERKDNMRLGLSLATNPKDNSFLACSPLWSHECGSSYYTTGMC 139 C +LNL ++L S + + L + + C PL GS YTT C Sbjct: 174947 CIRLNLVEISLG*NSST*NQLHLSKQIMLIHNAYQYNPCPPLLYIRRGSHMYTTRGC 175117 Score = 24.6 bits (52), Expect = 5.1 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -1 Query: 56 LVVGAPLETNGYQKTGDVYKCPVI 79 L++GAP T+ K G V+KC ++ Sbjct: 128041 LLIGAPGYTSSGFKKGAVFKCSIL 127970 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 429,131 Number of Sequences: 1 Number of extensions: 6646 Number of successful extensions: 42 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 40 length of query: 1189 length of database: 107,549 effective HSP length: 80 effective length of query: 1109 effective length of database: 107,469 effective search space: 119183121 effective search space used: 119183121 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|12643717|sp|Q13349|ITAD_HUMAN Integrin alpha-D precursor (Leukointegrin alpha D) (CD11d) (ADB2) (1162 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 35 0.005 >super_15687 Length = 322648 Score = 34.7 bits (78), Expect = 0.005 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Frame = -1 Query: 520 RFGAALTVLGDVNEDKLIDVAIGAPGEQE---NRGAVYLFHGASESGISPSHSQ 570 RFG ++ GD++++ DV IGAP E+ + GA+Y+++ S G++ ++ Q Sbjct: 111868 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYN-SHGGLTETNRQ 111710 Score = 34.7 bits (78), Expect = 0.005 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Frame = -1 Query: 520 RFGAALTVLGDVNEDKLIDVAIGAPGEQE---NRGAVYLFHGASESGISPSHSQ 570 RFG ++ GD++++ DV IGAP E+ + GA+Y+++ S G++ ++ Q Sbjct: 124018 RFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYN-SHGGLTETNRQ 123860 Score = 31.2 bits (69), Expect = 0.053 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 3/41 (7%) Frame = -3 Query: 143 ECPH---QEMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQF 180 ECP ++DI+ L+DGS S++ ++FN K +V+ ++ F Sbjct: 127181 ECPQISALKVDIIILLDGSSSVEAHNFNIGKVWVKNLLLNF 127059 Score = 28.5 bits (62), Expect = 0.34 Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 3/41 (7%) Frame = -3 Query: 143 ECPH---QEMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQF 180 ECP ++DI+ L+DGS S+ ++FN K +V+ ++ F Sbjct: 116384 ECPQISALKVDIIILLDGSTSVVAHNFNIGKVWVKNLLLNF 116262 Score = 26.6 bits (57), Expect = 1.3 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 224 LTFTATGILTVVTQLFHHKNGARKSAKKILIVITDGQKY 262 LTF LT L H + RKS +IL + T+G+K+ Sbjct: 232875 LTFILLQRLTRSLNLKHLLSNVRKSDTRILFLTTNGKKF 232991 Score = 25.8 bits (55), Expect = 2.2 Identities = 14/55 (25%), Positives = 26/55 (46%) Frame = -1 Query: 911 TFQLELPVKYAVYTMISRQEESTKYFNFATSDEKKMKEAEHRYRVNNLSQRDLAI 965 + LE K + M+ EE ++FN T+++ + H + N + DLA+ Sbjct: 217003 SLNLERLFKLSAIKMLKLFEEPIEHFNLFTTNQLSVSS*LHNFIFLNEKKNDLAL 216839 Score = 25.0 bits (53), Expect = 3.8 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 453 IGSYFGASLCSVDVDSDGSTDLILIGAPHY 482 +GS+FG S++ + ST+L LIGAP Y Sbjct: 128104 VGSWFG*IESSINTNFLSSTEL-LIGAPGY 128018 Score = 23.9 bits (50), Expect = 8.4 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = -2 Query: 374 WSGGAFLYPPNMSP 387 W GG FL PP P Sbjct: 300738 WRGGVFLLPPKNGP 300697 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 372,866 Number of Sequences: 1 Number of extensions: 5256 Number of successful extensions: 25 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 25 length of query: 1162 length of database: 107,549 effective HSP length: 79 effective length of query: 1083 effective length of database: 107,470 effective search space: 116390010 effective search space used: 116390010 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|2833247|sp|Q13797|ITA9_HUMAN Integrin alpha-9 precursor (Integrin alpha-RLC) (1035 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 60 3e-20 >super_15687 Length = 322648 Score = 59.7 bits (143), Expect(2) = 3e-20 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 4/133 (3%) Frame = -3 Query: 411 SMKLSGQKINPVLRMFGQS----ISGGIDMDGNGYPDVTVGAFMSDSVVLLRARPVITVD 466 S ++ G+ + + FG S ++G +D+D N YPDV VG+ SDSV +LR+RP+I V Sbjct: 111668 SQRIIGKTLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQ 111489 Query: 467 VSIFLPGSINITAPQCHDGQQPVNCLNVTTCFSFHGKHVPEEIGLNYVLMADVAKKEKGQ 526 + L + I C G + + + +F +H P IG + ++ +AK + Sbjct: 111488 ARVELQPRL-IDVITCVTGSAACSSVRICLNATFRKEHPPTNIGEH---ISHLAKNMLTR 111321 Query: 527 MPRVYFVLLGETM 539 + +YF L M Sbjct: 111320 IEYLYFFPLDVKM 111282 Score = 58.5 bits (140), Expect(2) = 6e-20 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 5/105 (4%) Frame = -3 Query: 411 SMKLSGQKINPVLRMFGQS----ISGGIDMDGNGYPDVTVGAFMSDSVVLLRARPVITVD 466 S ++ G+ + + FG S ++G +D+D N YPDV VG+ SDSV +LR+RP+I V Sbjct: 123818 SQRIIGKTLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPIIDVQ 123639 Query: 467 VSIFL-PGSINITAPQCHDGQQPVNCLNVTTCFSFHGKHVPEEIG 510 + L P I++ C G + + + +F +H P IG Sbjct: 123638 ARVELQPRFIDVIT--CVTGSAACSSVRICLNATFRKEHPPTNIG 123510 Score = 52.4 bits (124), Expect(2) = 3e-20 Identities = 25/56 (44%), Positives = 35/56 (61%), Gaps = 3/56 (5%) Frame = -1 Query: 354 LTGDGAYNAHFGESIASLDDLDNDGFPDVAIGAPKEDD---FAGAVYIYHGDAGGI 406 L+G A FG S+AS DLD +G+ DV IGAP E+ +GA+Y+Y+ GG+ Sbjct: 111895 LSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGL 111728 Score = 52.4 bits (124), Expect(2) = 6e-20 Identities = 25/56 (44%), Positives = 35/56 (61%), Gaps = 3/56 (5%) Frame = -1 Query: 354 LTGDGAYNAHFGESIASLDDLDNDGFPDVAIGAPKEDD---FAGAVYIYHGDAGGI 406 L+G A FG S+AS DLD +G+ DV IGAP E+ +GA+Y+Y+ GG+ Sbjct: 124045 LSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGL 123878 Score = 44.7 bits (104), Expect = 4e-06 Identities = 18/46 (39%), Positives = 34/46 (73%), Gaps = 2/46 (4%) Frame = -2 Query: 299 KMGSYFGSSLCAVDLNGDGLSDLLVGAPMFSEIR--DEGQVTVYIN 342 + G+YFG ++ A+D+N D DLLV AP+++++ D+G+V +++N Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMN 112393 Score = 44.7 bits (104), Expect(2) = 2e-08 Identities = 18/46 (39%), Positives = 34/46 (73%), Gaps = 2/46 (4%) Frame = -3 Query: 299 KMGSYFGSSLCAVDLNGDGLSDLLVGAPMFSEIR--DEGQVTVYIN 342 + G+YFG ++ A+D+N D DLLV AP+++++ D+G+V +++N Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMN 124539 Score = 33.1 bits (74), Expect(2) = 6e-06 Identities = 22/67 (32%), Positives = 35/67 (51%), Gaps = 4/67 (5%) Frame = -1 Query: 301 GSYFGSSLCAV-DLNGDGLSDLLVGAPM-FSEIRDEGQVTVYINRGNGALE--EQLALTG 356 G+ FG S+ + DL+ +G D+++GAP S G + VY N G E Q++L+ Sbjct: 111874 GARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQVSLSP 111695 Query: 357 DGAYNAH 363 A+ H Sbjct: 111694 SNAHVTH 111674 Score = 31.6 bits (70), Expect = 0.036 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 414 LSGQKINPVLRMFGQSISGGIDMDGNGYPDVTVGAFMSDS 453 LSG ++ FG S++ D+D NGY DV +GA +S Sbjct: 111895 LSGSSLSGA--RFGMSVASAGDLDQNGYDDVIIGAPYEES 111782 Score = 31.6 bits (70), Expect = 0.036 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 414 LSGQKINPVLRMFGQSISGGIDMDGNGYPDVTVGAFMSDS 453 LSG ++ FG S++ D+D NGY DV +GA +S Sbjct: 124045 LSGSSLSGA--RFGMSVASAGDLDQNGYDDVIIGAPYEES 123932 Score = 31.2 bits (69), Expect(2) = 2e-05 Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 4/64 (6%) Frame = -1 Query: 301 GSYFGSSLCAV-DLNGDGLSDLLVGAPM-FSEIRDEGQVTVYINRGNGALE--EQLALTG 356 G+ FG S+ + DL+ +G D+++GAP S G + VY N G E Q++L+ Sbjct: 124024 GARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETNRQVSLSP 123845 Query: 357 DGAY 360 A+ Sbjct: 123844 SNAH 123833 Score = 29.6 bits (65), Expect(2) = 2e-05 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -3 Query: 368 IASLDDLDNDGFPDVAIGAPKED 390 +A D+DN+ +PDV +G+P+ D Sbjct: 123749 VAGAVDVDNNHYPDVIVGSPRSD 123681 Score = 29.6 bits (65), Expect(2) = 6e-06 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -3 Query: 368 IASLDDLDNDGFPDVAIGAPKED 390 +A D+DN+ +PDV +G+P+ D Sbjct: 111599 VAGAVDVDNNHYPDVIVGSPRSD 111531 Score = 26.6 bits (57), Expect = 1.2 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -3 Query: 243 RYTYLGYAVTAGHFSHPSTIDVVGGAPQDKGIGKVYI 279 +Y GY+VT+G+F +T + G P+ + G V + Sbjct: 112763 KYLNPGYSVTSGNFYGGATEYIASGVPKFQSKGTVIV 112653 Score = 26.6 bits (57), Expect(2) = 2e-08 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -1 Query: 243 RYTYLGYAVTAGHFSHPSTIDVVGGAPQDKGIGKVYI 279 +Y GY+VT+G+F +T + G P+ + G V + Sbjct: 124909 KYLNPGYSVTSGNFYGGATEYIASGVPKFQSKGTVIV 124799 Score = 26.6 bits (57), Expect = 1.2 Identities = 14/31 (45%), Positives = 18/31 (57%) Frame = -1 Query: 63 VLVGAPKADSKYSPSVKSPGAVFKCRVHTNP 93 +L+GAP Y+ S GAVFKC + NP Sbjct: 128041 LLIGAPG----YTSSGFKKGAVFKCSILLNP 127961 Score = 25.0 bits (53), Expect = 3.3 Identities = 13/31 (41%), Positives = 18/31 (57%) Frame = -3 Query: 63 VLVGAPKADSKYSPSVKSPGAVFKCRVHTNP 93 +L+GAP ++ S GAVFKC + NP Sbjct: 116960 LLIGAPG----FTSSGFKKGAVFKCSILLNP 116880 Score = 24.6 bits (52), Expect = 4.4 Identities = 10/24 (41%), Positives = 13/24 (53%) Frame = -2 Query: 235 NDEVIMNRRYTYLGYAVTAGHFSH 258 ND+ I +TY G+ V G F H Sbjct: 33807 NDQTIHTSGFTYQGWFVEPGRFFH 33736 Score = 24.3 bits (51), Expect = 5.7 Identities = 8/12 (66%), Positives = 10/12 (82%) Frame = +3 Query: 864 CIIPQEQENIFH 875 CI+P EQ+ IFH Sbjct: 49710 CIVPVEQQRIFH 49745 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.320 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 370,956 Number of Sequences: 1 Number of extensions: 5716 Number of successful extensions: 43 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 41 length of query: 1035 length of database: 107,549 effective HSP length: 79 effective length of query: 956 effective length of database: 107,470 effective search space: 102741320 effective search space used: 102741320 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|1708570|sp|P53708|ITA8_HUMAN Integrin alpha-8 (1025 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 57 2e-18 >super_15687 Length = 322648 Score = 57.0 bits (136), Expect(2) = 2e-18 Identities = 39/103 (37%), Positives = 58/103 (55%), Gaps = 4/103 (3%) Frame = -3 Query: 392 NTKPSQVLQGVWASHAVPSGFGFTL----RGDSDIDKNDYPDLIVGAFGTGKVAVYRARP 447 NT SQ + G +V FG++L G D+D N YPD+IVG+ + V V R+RP Sbjct: 111680 NTPLSQRIIGKTLKSSVLQ-FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRP 111504 Query: 448 VVTVDAQLLLHPMIINLENKTCQVPDSMTSAACFSLRVCASVT 490 ++ V A++ L P +I++ TC SAAC S+R+C + T Sbjct: 111503 IIDVQARVELQPRLIDV--ITCVT----GSAACSSVRICLNAT 111393 Score = 56.2 bits (134), Expect(2) = 3e-18 Identities = 39/103 (37%), Positives = 57/103 (54%), Gaps = 4/103 (3%) Frame = -3 Query: 392 NTKPSQVLQGVWASHAVPSGFGFTL----RGDSDIDKNDYPDLIVGAFGTGKVAVYRARP 447 NT SQ + G +V FG++L G D+D N YPD+IVG+ + V V R+RP Sbjct: 123830 NTPLSQRIIGKTLKSSVLQ-FGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRP 123654 Query: 448 VVTVDAQLLLHPMIINLENKTCQVPDSMTSAACFSLRVCASVT 490 ++ V A++ L P I++ TC SAAC S+R+C + T Sbjct: 123653 IIDVQARVELQPRFIDV--ITCVT----GSAACSSVRICLNAT 123543 Score = 48.9 bits (115), Expect(2) = 2e-18 Identities = 25/66 (37%), Positives = 39/66 (58%), Gaps = 3/66 (4%) Frame = -1 Query: 336 PQILTGTETFG-RFGSAMAHLGDLNQDGYNDIAIGVPF--AGKDQRGKVLIYNGNKDGLN 392 PQ+L+G+ G RFG ++A GDL+Q+GY+D+ IG P+ + G + +Y + GL Sbjct: 111904 PQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLT 111725 Query: 393 TKPSQV 398 QV Sbjct: 111724 ETNRQV 111707 Score = 48.9 bits (115), Expect(2) = 3e-18 Identities = 25/66 (37%), Positives = 39/66 (58%), Gaps = 3/66 (4%) Frame = -1 Query: 336 PQILTGTETFG-RFGSAMAHLGDLNQDGYNDIAIGVPF--AGKDQRGKVLIYNGNKDGLN 392 PQ+L+G+ G RFG ++A GDL+Q+GY+D+ IG P+ + G + +Y + GL Sbjct: 124054 PQVLSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLT 123875 Query: 393 TKPSQV 398 QV Sbjct: 123874 ETNRQV 123857 Score = 45.1 bits (105), Expect = 3e-06 Identities = 20/49 (40%), Positives = 32/49 (64%) Frame = -2 Query: 278 QMASYFGYTVVVSDVNSDGLDDVLVGAPLFMEREFESNPREVGQIYLYL 326 Q +YFG+TVV D+N D DD+LV APL+ + N + G+++L++ Sbjct: 112530 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYN----DVNGYDQGKVFLFM 112396 Score = 45.1 bits (105), Expect = 3e-06 Identities = 20/49 (40%), Positives = 32/49 (64%) Frame = -3 Query: 278 QMASYFGYTVVVSDVNSDGLDDVLVGAPLFMEREFESNPREVGQIYLYL 326 Q +YFG+TVV D+N D DD+LV APL+ + N + G+++L++ Sbjct: 124676 QQGAYFGHTVVAMDINKDSYDDLLVSAPLYN----DVNGYDQGKVFLFM 124542 Score = 35.4 bits (80), Expect = 0.002 Identities = 26/77 (33%), Positives = 38/77 (48%), Gaps = 4/77 (5%) Frame = -2 Query: 357 DLNQDGYNDIAIGVPF----AGKDQRGKVLIYNGNKDGLNTKPSQVLQGVWASHAVPSGF 412 D+N+D Y+D+ + P G DQ GKV ++ N+ T P + W SH PS Sbjct: 112491 DINKDSYDDLLVSAPLYNDVNGYDQ-GKVFLFMNNQ----THPGHQM---WVSH--PSTL 112342 Query: 413 GFTLRGDSDIDKNDYPD 429 G+TL + N YP+ Sbjct: 112341 GYTLH----LHTNVYPE 112303 Score = 33.9 bits (76), Expect = 0.007 Identities = 23/64 (35%), Positives = 33/64 (50%), Gaps = 4/64 (6%) Frame = -3 Query: 357 DLNQDGYNDIAIGVPF----AGKDQRGKVLIYNGNKDGLNTKPSQVLQGVWASHAVPSGF 412 D+N+D Y+D+ + P G DQ GKV ++ N+ T P + W SH PS Sbjct: 124637 DINKDSYDDLLVSAPLYNDVNGYDQ-GKVFLFMNNQ----THPGHQM---WVSH--PSTL 124488 Query: 413 GFTL 416 G+TL Sbjct: 124487 GYTL 124476 Score = 29.6 bits (65), Expect = 0.13 Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 1/44 (2%) Frame = -1 Query: 283 FGYTVV-VSDVNSDGLDDVLVGAPLFMEREFESNPREVGQIYLY 325 FG +V D++ +G DDV++GAP ES G IY+Y Sbjct: 111865 FGMSVASAGDLDQNGYDDVIIGAPY-----EESTSTSSGAIYVY 111749 Score = 29.6 bits (65), Expect = 0.13 Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 1/44 (2%) Frame = -1 Query: 283 FGYTVV-VSDVNSDGLDDVLVGAPLFMEREFESNPREVGQIYLY 325 FG +V D++ +G DDV++GAP ES G IY+Y Sbjct: 124015 FGMSVASAGDLDQNGYDDVIIGAPY-----EESTSTSSGAIYVY 123899 Score = 29.6 bits (65), Expect = 0.13 Identities = 15/44 (34%), Positives = 22/44 (49%) Frame = -1 Query: 885 NCTNIECLQISCAVGRLEGGESAVLKVRSRLWAHTFLQRKNDPY 928 +C ++ C ISC V RL+ S L +LW T Q ++ Y Sbjct: 120784 SCNDVICRSISCTVSRLDTFFSINLIASFKLWLPTLNQVSSEYY 120653 Score = 29.3 bits (64), Expect = 0.18 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -1 Query: 397 QVLQGVWASHAVPSGFGFTLRGDSDIDKNDYPDLIVGA 434 QVL G S A FG ++ D+D+N Y D+I+GA Sbjct: 111901 QVLSGSSLSGA---RFGMSVASAGDLDQNGYDDVIIGA 111797 Score = 29.3 bits (64), Expect = 0.18 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -1 Query: 397 QVLQGVWASHAVPSGFGFTLRGDSDIDKNDYPDLIVGA 434 QVL G S A FG ++ D+D+N Y D+I+GA Sbjct: 124051 QVLSGSSLSGA---RFGMSVASAGDLDQNGYDDVIIGA 123947 Score = 27.3 bits (59), Expect = 0.67 Identities = 14/44 (31%), Positives = 21/44 (46%) Frame = -2 Query: 885 NCTNIECLQISCAVGRLEGGESAVLKVRSRLWAHTFLQRKNDPY 928 +C ++ C I C V RL+ S L +LW T Q ++ Y Sbjct: 108189 SCNDVICRSILCTVSRLDPFFSINLIASFKLWLPTLNQVSSEYY 108058 Score = 26.9 bits (58), Expect = 0.87 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -3 Query: 230 GYSVAAGEFTGDSQQELVAGIPR 252 GYSV +G F G + + + +G+P+ Sbjct: 112748 GYSVTSGNFYGGATEYIASGVPK 112680 Score = 26.9 bits (58), Expect = 0.87 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -1 Query: 230 GYSVAAGEFTGDSQQELVAGIPR 252 GYSV +G F G + + + +G+P+ Sbjct: 124894 GYSVTSGNFYGGATEYIASGVPK 124826 Score = 25.4 bits (54), Expect = 2.5 Identities = 10/24 (41%), Positives = 15/24 (61%) Frame = +1 Query: 833 PNINPQDIKPAASPEDTPELSAFL 856 P +NP D+KP A ++ EL F+ Sbjct: 116914 PFLNPDDVKPGAPISNSVELRKFV 116985 Score = 25.4 bits (54), Expect = 2.5 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -2 Query: 597 AHILVDCGEDNLCVPDL 613 +H+L++C E NLC P + Sbjct: 115455 SHMLLNCDESNLCSPTI 115405 Score = 24.3 bits (51), Expect = 5.7 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -3 Query: 113 APLYHWRTLKPTPEKGPVGT 132 +PLY +T+K P+KG V T Sbjct: 85304 SPLYSRQTIKKIPKKGEVKT 85245 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,965 Number of Sequences: 1 Number of extensions: 4940 Number of successful extensions: 35 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 33 length of query: 1025 length of database: 107,549 effective HSP length: 78 effective length of query: 947 effective length of database: 107,471 effective search space: 101775037 effective search space used: 101775037 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits) TBLASTN 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|124945|sp|P13612|ITA4_HUMAN Integrin alpha-4 precursor (Integrin alpha-IV) (VLA-4) (CD49d) (1038 letters) Database: cons/super_15687 1 sequences; 322,648 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value super_15687 55 3e-19 >super_15687 Length = 322648 Score = 55.1 bits (131), Expect(2) = 3e-19 Identities = 29/65 (44%), Positives = 41/65 (62%), Gaps = 4/65 (6%) Frame = -3 Query: 417 SSTFSQRIEGLQISKSLSMFGQS----ISGQIDADNNGYVDVAVGAFRSDSAVLLRTRPV 472 ++ SQRI G + S+ FG S ++G +D DNN Y DV VG+ RSDS +LR+RP+ Sbjct: 123830 NTPLSQRIIGKTLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPI 123651 Query: 473 VIVDA 477 + V A Sbjct: 123650 IDVQA 123636 Score = 55.1 bits (131), Expect(2) = 3e-19 Identities = 29/65 (44%), Positives = 41/65 (62%), Gaps = 4/65 (6%) Frame = -3 Query: 417 SSTFSQRIEGLQISKSLSMFGQS----ISGQIDADNNGYVDVAVGAFRSDSAVLLRTRPV 472 ++ SQRI G + S+ FG S ++G +D DNN Y DV VG+ RSDS +LR+RP+ Sbjct: 111680 NTPLSQRIIGKTLKSSVLQFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSVFVLRSRPI 111501 Query: 473 VIVDA 477 + V A Sbjct: 111500 IDVQA 111486 Score = 53.5 bits (127), Expect(2) = 3e-19 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = -1 Query: 364 LVGSDKYAARFGESIVNLGDIDNDGFEDVAIGAPQEDDL---QGAIYIYNGRADGISSTF 420 L GS ARFG S+ + GD+D +G++DV IGAP E+ GAIY+Y G++ T Sbjct: 111895 LSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETN 111716 Query: 421 SQ 422 Q Sbjct: 111715 RQ 111710 Score = 53.5 bits (127), Expect(2) = 3e-19 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = -1 Query: 364 LVGSDKYAARFGESIVNLGDIDNDGFEDVAIGAPQEDDL---QGAIYIYNGRADGISSTF 420 L GS ARFG S+ + GD+D +G++DV IGAP E+ GAIY+Y G++ T Sbjct: 124045 LSGSSLSGARFGMSVASAGDLDQNGYDDVIIGAPYEESTSTSSGAIYVYYNSHGGLTETN 123866 Query: 421 SQ 422 Q Sbjct: 123865 RQ 123860 Score = 46.6 bits (109), Expect = 1e-06 Identities = 19/45 (42%), Positives = 34/45 (75%), Gaps = 2/45 (4%) Frame = -2 Query: 309 GSYFGASVCAVDLNADGFSDLLVGAPMQSTIR--EEGRVFVYINS 351 G+YFG +V A+D+N D + DLLV AP+ + + ++G+VF+++N+ Sbjct: 112524 GAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNN 112390 Score = 46.6 bits (109), Expect = 1e-06 Identities = 19/45 (42%), Positives = 34/45 (75%), Gaps = 2/45 (4%) Frame = -3 Query: 309 GSYFGASVCAVDLNADGFSDLLVGAPMQSTIR--EEGRVFVYINS 351 G+YFG +V A+D+N D + DLLV AP+ + + ++G+VF+++N+ Sbjct: 124670 GAYFGHTVVAMDINKDSYDDLLVSAPLYNDVNGYDQGKVFLFMNN 124536 Score = 30.0 bits (66), Expect = 0.10 Identities = 14/29 (48%), Positives = 18/29 (61%) Frame = -1 Query: 430 SKSLSMFGQSISGQIDADNNGYVDVAVGA 458 S S + FG S++ D D NGY DV +GA Sbjct: 111883 SLSGARFGMSVASAGDLDQNGYDDVIIGA 111797 Score = 30.0 bits (66), Expect = 0.10 Identities = 14/29 (48%), Positives = 18/29 (61%) Frame = -1 Query: 430 SKSLSMFGQSISGQIDADNNGYVDVAVGA 458 S S + FG S++ D D NGY DV +GA Sbjct: 124033 SLSGARFGMSVASAGDLDQNGYDDVIIGA 123947 Score = 29.3 bits (64), Expect = 0.18 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%) Frame = -3 Query: 373 RFGESIVN----LGDIDNDGFEDVAIGAPQEDDL 402 +FG S+VN D+DN+ + DV +G+P+ D + Sbjct: 111626 QFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSV 111525 Score = 29.3 bits (64), Expect = 0.18 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%) Frame = -3 Query: 373 RFGESIVN----LGDIDNDGFEDVAIGAPQEDDL 402 +FG S+VN D+DN+ + DV +G+P+ D + Sbjct: 123776 QFGYSLVNGVAGAVDVDNNHYPDVIVGSPRSDSV 123675 Score = 24.6 bits (52), Expect = 4.4 Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 3/48 (6%) Frame = -3 Query: 245 LDKQNQVK-FGSYL--GYSVGAGHFRSQHTTEVVGGAPQHEQIGKAYI 289 ++ Q +VK YL GYSV +G+F T + G P+ + G + Sbjct: 112796 INPQERVK*ITKYLNPGYSVTSGNFYGGATEYIASGVPKFQSKGTVIV 112653 Score = 24.3 bits (51), Expect = 5.7 Identities = 10/32 (31%), Positives = 16/32 (49%) Frame = -1 Query: 258 GYSVGAGHFRSQHTTEVVGGAPQHEQIGKAYI 289 GYSV +G+F T + G P+ + G + Sbjct: 124894 GYSVTSGNFYGGATEYIASGVPKFQSKGTVIV 124799 Score = 23.9 bits (50), Expect = 7.5 Identities = 20/67 (29%), Positives = 27/67 (39%) Frame = +2 Query: 602 FPPLQPILQQKKEKDIMKKTINFARFCAHENCSADLQVSAKIGFLKPHENKTYLAVGSMK 661 FPP P + KK K MKK A S+ + + +G L+ K V S Sbjct: 144614 FPPPTPSKKDKKSKKSMKKVQKQTAKMATVESSSAISSLSDVGQLQSDNFKVISFVFSHL 144793 Query: 662 TLMLNVS 668 + NVS Sbjct: 144794 HEVNNVS 144814 Score = 23.9 bits (50), Expect = 7.5 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -1 Query: 308 LGSYFGASVCAVDLNADGFSDLLVGAP-MQSTIREEGRVF 346 +GS+FG +++ N ++LL+GAP S+ ++G VF Sbjct: 128104 VGSWFG*IESSINTNFLSSTELLIGAPGYTSSGFKKGAVF 127985 Score = 23.5 bits (49), Expect = 9.8 Identities = 11/48 (22%), Positives = 22/48 (44%) Frame = -1 Query: 493 VENGWPSVCIDLTLCFSYKGKEVPGYIVLFYNMSLDVNRKAESPPRFY 540 + G+ +C+ +S + +E P V YN +L++ RF+ Sbjct: 261142 LRKGFSGLCLTSICSYSKRLQEAPIQTVGLYNCNLEIRLNKNVNNRFH 260999 Score = 23.5 bits (49), Expect = 9.8 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 643 IGFLKPHENKTYLAVGSMKTLMLNV 667 + F + + ++TYL+V M TL LN+ Sbjct: 104293 VTFFRSNVSQTYLSVVLMVTLTLNI 104367 Database: cons/super_15687 Posted date: Mar 4, 2004 2:53 PM Number of letters in database: 322,648 Number of sequences in database: 1 Lambda K H 0.318 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 394,893 Number of Sequences: 1 Number of extensions: 6268 Number of successful extensions: 38 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 38 length of query: 1038 length of database: 107,549 effective HSP length: 79 effective length of query: 959 effective length of database: 107,470 effective search space: 103063730 effective search space used: 103063730 frameshift window, decay const: 50, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)